Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq35 87.8 2e-12 >seq2 Length=91783 Score = 150 bits (166), Expect = 2e-31 Identities = 350/525 (67%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 ||||| ||| |||||| ||||| ||| | ||||| ||||| || || |||| || ||| Sbjct 36652 TTTCCTATTAAATATCATGACATATGGCAGATGTATAAAAAAGCCGAGTCATCATTCTGG 36711 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCT 57668 || || |||||||| || || || || | |||||| || | || || Sbjct 36712 ACGGTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTTATCATTAAATGATAAA 36771 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 || ||| | |||||| | | | || || ||||| ||||| || ||||||||||||||| Sbjct 36772 GAAAGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTCAGATGGTATTGTTAAC 36831 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 | ||||| || || ||||| | | |||||| | | || || | |||||||| Sbjct 36832 GCCAATTTAGTTGAGAGATTCGCTAATGAAGTGACAATATTAGAAGCAAAGTGCTTTTAT 36891 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 ||||||||||| ||||| ||||| | ||| || |||||||| || | || ||| | Sbjct 36892 GGATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATTCATTATTAATAGATGCT 36951 Query 57849 TACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG 57908 || | | || | || || ||| || || || ||||| || || || Sbjct 36952 TATATTACAGATCAAGATGAAAAAACACATCTCTTTAATGCGATAAGTACTATTCCATGT 37011 Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCC 57968 || ||||| || || ||| || | |||||||| ||| | | | | |||| | Sbjct 37012 ATAAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAAGATGAAAAATCATCATTCG-C 37070 Query 57969 GAGAGGC-TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGC 58027 || | || | || || || || ||| ||||| ||||| ||||| ||| |||||| | Sbjct 37071 GACACGCGTCATTGCTTTTGCGTGCGTAGAAGGAATATTTTTTTCCGGCGCATTTGCGTC 37130 Query 58028 AATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||| || ||| | ||||| | || || ||||| || || || || Sbjct 37131 AATCTTCTGGCTAAAGAACAGAGGTCTTATGCCTGGTCTTACTTT 37175 >seq35 Length=73508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || |||||||| || ||||| ||||| || || | || ||||||||| Sbjct 17036 ATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGGG 17095 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | |||| || || ||||| | || || || || Sbjct 17096 GATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCAA 17155 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| || || || || |||||||| | || | | || |||||| Sbjct 17156 CAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAAC 17215 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||| ||| | ||| |||| | ||| | || || ||| Sbjct 17216 ATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGGT 17263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763413365120