Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 136 8e-27 >seq2 Length=91783 Score = 136 bits (150), Expect = 8e-27 Identities = 306/449 (68%), Gaps = 33/449 (7%) Strand=Plus/Plus Query 101919 TTGCCTTTGC-TGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||| ||||| ||| || |||||||| || ||| || ||||| || || || |||||| Sbjct 37082 TTGCTTTTGCGTGC-GTAGAAGGAATATTTTTTTCCGGCGCATTTGCGTCAATCTTCTGG 37140 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | |||||||| ||| || |||||||||| || | ||| ||||| || ||||||||||| Sbjct 37141 CTAAAGAACAGAGGTCTTATGCCTGGTCTTACTTTCTCTAATGAATTAATTTCTAGGGAT 37200 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| | ||| | ||||| || || ||| | || | ||| || ||| | Sbjct 37201 GAAGGGTTGCATTGTGACTTCGCTTGTTTGC---TAAATCAATATTTAATTAATA---AA 37254 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || | | |||||||| || || | ||||| || ||| || |||||||||| Sbjct 37255 TCGCCACA---CATTCTTGATATAGTGAAAGAAGCGGTAGAAATAGAGAAAGAATTTCTA 37311 Query 102158 A----CAGTTTCCCTGCCTGTTAAA--TTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | |||||| || | |||| ||| |||| ||||| || ||| | ||| | || Sbjct 37312 AGTGTCAGTTTACC-----GGTAAATCTTATTGGG-ATGAATTGTAAGCTTATGTGTCAA 37365 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || ||||||||||| || |||| | |||| || | | ||||| || || | || ||| Sbjct 37366 TATATTGAATTTGTAGCTGATAGATTATTAATTAATTTAGGACTTGAGAAATATTACAAT 37425 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATAT---TTCCCTCGAGAATAAGACCAACTTT 102328 || |||||| || ||||| ||||| || | | | || ||||| || Sbjct 37426 ACACTGAATCCCTTCGATTTTATGGAAAATATAAGTTTAGTAGGG---AAAACCAATTTC 37482 Query 102329 TTTG--AAAAGAGAGTCGCCGAGTATCAA 102355 |||| ||||||||||| | | |||||| Sbjct 37483 TTTGATAAAAGAGAGTCAC--AATATCAA 37509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577204031880