Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 304 2e-77 seq466 206 3e-48 seq504 174 2e-38 >seq2 Length=91783 Score = 304 bits (336), Expect = 2e-77 Identities = 616/900 (68%), Gaps = 27/900 (3%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| |||| | | | ||| || || ||||| ||||| ||| | || |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-TTCAGAAA 33408 |||||| ||||| || ||||| ||||||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | |||||||| || || ||||| |||||| ||| | | ||||||||| || || | Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || || | | ||| | |||||||||| || || |||||| || || | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGC--TTCTTTCAC 37276 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 || ||| || | | | || | || | ||||| || | | |||||| |||| Sbjct 37275 TATATC-AAGAATGTGTGG---CGATTTATTAATTAAATATTGATTTAGCAAACAAGCGA 37220 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || || |||| || || || ||| ||||||||| ||||| || || || || |||| Sbjct 37219 AGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCA 37160 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | || || | || || ||||| || || || || |||| |||||||| || ||||||| Sbjct 37159 TAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTT 37100 Query 33709 CTACTGCA-GCAAAGGCAATAAGTC-TCTCTCCATAACCGGCGCTGTCATGT---ATCCA 33763 |||| ||| ||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37099 CTAC-GCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCA 37042 Query 33764 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || | ||||| || || |||||||||| ||| || || || ||| ||||||||||| Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 33824 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 || ||||||||| |||| ||| ||||| ||| || || | |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT--GC 33941 |||||| ||||| ||||| | |||||||| || || || | || || |||| | | Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTC 36864 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 ||||| || |||| || ||||||| | || || || ||||| || |||||| Sbjct 36863 ACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT----TCCAATC 34057 || || || | || | ||||| ||| |||| | | | | || || |||||| Sbjct 36803 AATGCTAAAATATTTGAAATAAAGTATCTTTCTT----TATCATTTAATGATAACCAATC 36748 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 ||| | || || || ||| |||||||| || ||||| ||||||| ||| || ||||| Sbjct 36747 ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 |||||| | ||| ||||||||||||| || || || | |||| | || | | |||||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 >seq466 Length=27249 Score = 206 bits (228), Expect = 3e-48 Identities = 682/1053 (65%), Gaps = 17/1053 (2%) Strand=Plus/Minus Query 62085 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62144 || |||||||| ||||| | || | ||||||| |||||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 62145 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62204 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 62205 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AAC 62263 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 62264 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTACCATAAT 62320 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 62321 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62380 ||| || || ||| | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 62381 GTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62440 || || | ||| ||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 62441 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 ||| | | |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 62501 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCA 62560 |||||| |||||||| ||| ||| || ||||| | | || | |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 62561 AAGATCCGACGGTACAACANNNNNNNNNNNAT-ATTGTAGAATACCGTTACTGGCGTACG 62619 | ||| ||| || | | || | ||| || ||||| | Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 |||| ||| | ||||| || || | |||||||| | |||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAA 62739 |||| |||| | |||||||| || | || || || | | |||| | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 62740 ATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 62859 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62918 |||| |||| | | || ||| || || || | | ||| |||||| Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAACTGATTTAAATAAATTAAAGTCAAATTCT 26017 Query 62919 CCATCTATTACAAACATGTTCAATGCAACAGAT----GCCAGATTACACACGGCTACCTC 62974 |||| |||||||| ||| | |||| || |||| || || || ||||| || Sbjct 26016 CCATTAATTACAAAT---TTCGGTA-AACATATACTAGCCAAGTTGCATACTGCTACTTC 25961 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 || | | | ||||||| || || || || || ||| ||| | || || || | Sbjct 25960 ATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAAT 25901 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 ||| | ||||||||| || || | ||| ||||| | ||| | || |||||||| Sbjct 25900 ATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGT 25841 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 |||||| || || || ||||| || |||||||| Sbjct 25840 TTCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 >seq504 Length=119805 Score = 174 bits (192), Expect = 2e-38 Identities = 850/1336 (64%), Gaps = 24/1336 (2%) Strand=Plus/Plus Query 62081 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62140 || ||| ||||| || ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 62141 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 62199 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 62200 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGCAATTTCCCAAATAGTTT 62256 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTT---AGTTCCCATGCAGTTT 9401 Query 62257 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTA 62313 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 62314 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 62373 | |||||| || || || |||| | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 62374 GATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 62433 | | || || | ||| || ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 62434 TATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 62493 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 62494 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-ATGTTCC 62552 | | || | | ||||||||| | || | || | || || ||| | || | |||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 62553 CAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 || | || | || | | | || | ||| || ||||| Sbjct 9702 ATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAA-AGTGAAAAATTCCTTTACTT 9760 Query 62613 G-CGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT--C 62669 || | || ||| | |||| ||||| || || | | | || |||| ||||| | Sbjct 9761 AACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTT--CAACTGAC 9817 Query 62670 GCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCC 62729 | || | || |||||||| |||||||| || || ||||| |||| || | Sbjct 9818 TCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCATTT 9877 Query 62730 GGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATA 62789 | || ||||| ||||| | || | ||| || || || |||||||| ||||| || Sbjct 9878 TGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCTATT 9937 Query 62790 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 62849 || ||||||| ||||| ||| ||| | |||| | ||||||| | || | Sbjct 9938 CCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTACTG 9997 Query 62850 TCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62909 || ||| ||||| |||||||| || ||||| || | | ||| | |||| Sbjct 9998 TCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCAAAA 10057 Query 62910 TCAAATCGCCCATCTATTACAAACATGTTCAATGCAA-CAGATGCCAGATTACACACGGC 62968 |||||| || ||| ||||||| | || || ||| || |||||| ||||| || || Sbjct 10058 TCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAACAGC 10116 Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 | ||||| ||| | ||||| ||||| || | ||| | ||| | || || | Sbjct 10117 AATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTATTAT 10176 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 || ||||||||||||||||| | | || || | ||| |||||||| ||| |||| || Sbjct 10177 GCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGGTGT 10236 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63148 ||| ||||| || || | ||| || || || ||||| | || || ||||| | | Sbjct 10237 ACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA-ACC 10294 Query 63149 TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 || ||| | || || ||| ||| || || ||| | || || || |||||||| Sbjct 10295 GTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCAAAC 10353 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 || || | | | || | || || | || ||||| ||| | | | | || Sbjct 10354 ATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAAC 10413 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || || |||||| | |||| ||||| | || |||| | |||||| | |||| || Sbjct 10414 TCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATC 10473 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 || |||| ||||| ||| | | ||| | || | | |||||| |||||| ||||| Sbjct 10474 TTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTC 10533 Query 63389 CAAGTATATGGCCATA 63404 || || || |||||| Sbjct 10534 TAAATAAATTGCCATA 10549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813380222080