Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 324 2e-83 seq466 197 2e-45 seq504 190 3e-43 >seq2 Length=91783 Score = 324 bits (358), Expect = 2e-83 Identities = 614/893 (69%), Gaps = 17/893 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 |||||| |||| | | | ||| || || ||||| ||||| ||| |||| |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA-TTCAGAAA 35984 |||||| |||||||| ||||| | ||| ||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 | |||||||| || |||||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || || || | | ||| | |||||||||| || || ||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 || | | ||| | || | || | ||||| || | | |||||| |||| Sbjct 37273 TATCAAGAA-TGTGTGG-----CGATTTATTAATTAAATATTGATTTAGCAAACAAGCGA 37220 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 | || || || | || || || ||| ||||||||| || || || || || || |||| Sbjct 37219 AGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCA 37160 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | || || | || || ||||| || || |||||||||| || ||||| || ||||||| Sbjct 37159 TAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTT 37100 Query 36285 CTACTGCCGCAAAGGCAATAAGTC-TCTCTCCATAACCGGCACTGTCATGT---ATCCAC 36340 |||| |||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37099 CTACGCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCAT 37041 Query 36341 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 || | ||||| || || |||||||||| ||| || || || ||| |||||||||||| Sbjct 37040 TTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGA 36981 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 | ||||||||| |||| ||| ||| | ||| || || | |||||| || | Sbjct 36980 TGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTA 36921 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT-GT-A 36518 ||||| ||||| ||||| | ||||||||| || || || | || || |||| | || | Sbjct 36920 TGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTCA 36863 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 |||| || |||| || ||||||| | || || || || || || ||||||| Sbjct 36862 CTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAA 36803 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || || | || | ||||| ||| |||| || ||| | ||||||||| Sbjct 36802 ATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCATTTC 36743 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 | || || || ||| |||||||| || ||||| ||||||| ||| || |||||||||| Sbjct 36742 TGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACA 36683 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751 | | ||| ||||||||||||| ||| ||||| | |||| | || | || |||| Sbjct 36682 TCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTT 36630 >seq466 Length=27249 Score = 197 bits (218), Expect = 2e-45 Identities = 679/1053 (64%), Gaps = 17/1053 (2%) Strand=Plus/Minus Query 64878 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 64937 || |||||||| ||||| | || | ||||||| |||||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 64938 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 64997 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 64998 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 65056 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 65057 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTGCCATAAT 65113 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 65114 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 65173 ||| || || ||| | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 65174 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 65233 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 65234 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 65293 ||| | | |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 65294 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 |||||| |||||||| ||| ||| || ||||| | | || |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 65354 AAGATCCGACGGTACAA-CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 65412 | ||| ||| || || | ||| || ||||| | Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 |||| ||| | || || || || | |||||||| |||||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 |||| |||| | ||||| || || | || || || | | |||| | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 65533 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 65652 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 65711 |||| |||| | | || ||| || || || | | ||| |||||| Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAACTGATTTAAATAAATTAAAGTCAAATTCT 26017 Query 65712 TCATCTATTACAAACATGTTCAATGCAACAGAT----GCCAGATTACAAACGGCTACCTC 65767 ||| |||||||| ||| | |||| || |||| || || || ||||| || Sbjct 26016 CCATTAATTACAAA---TTTCGGT-AAACATATACTAGCCAAGTTGCATACTGCTACTTC 25961 Query 65768 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 65827 || | | | ||||||| || || || || || ||| ||| | || || || | Sbjct 25960 ATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAAT 25901 Query 65828 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 65887 ||| | ||||||||| || || | ||| ||||| | ||| | || |||||||| Sbjct 25900 ATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGT 25841 Query 65888 TTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 |||||| || || || ||||| || |||||||| Sbjct 25840 TTCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 >seq504 Length=119805 Score = 190 bits (210), Expect = 3e-43 Identities = 853/1336 (64%), Gaps = 24/1336 (2%) Strand=Plus/Plus Query 64874 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 64933 || ||| ||||| || ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 64934 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 64992 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 64993 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 65049 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 65050 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTG 65106 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 65107 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 65166 | |||||| || || || |||| | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 65167 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 65226 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 65227 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 65286 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 65287 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCC 65345 | | || | | ||||||||| | || | || | || || ||| | || | |||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 65346 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 65405 || | || | || | | | | ||| || ||||| Sbjct 9702 ATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGT-GAAAAATTCCTTTACTT 9760 Query 65406 G-CGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT--C 65462 || | || ||| | |||| || || || || | | | || |||||| ||| | Sbjct 9761 AACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACTGAC 9817 Query 65463 GCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC 65522 | || | || |||||||| ||||| || || || ||||| |||| || | Sbjct 9818 TCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCATTT 9877 Query 65523 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 65582 | || ||||| ||||| | || | ||| || ||||| |||||||| ||||| || Sbjct 9878 TGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCTATT 9937 Query 65583 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 65642 || ||||||| ||||| ||| ||| | |||| | ||||||| | || | Sbjct 9938 CCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTACTG 9997 Query 65643 TCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 65702 || ||| ||||| |||||||| || ||||| || | | ||| | |||| Sbjct 9998 TCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCAAAA 10057 Query 65703 TCAAATCGCTCATCTATTACAAACATGTTCAATGCAA-CAGATGCCAGATTACAAACGGC 65761 |||||| | ||| ||||||| | || || ||| || |||||| |||||||| || Sbjct 10058 TCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAACAGC 10116 Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 | ||||| ||| | ||||| ||||| || | ||| | ||| | || || | Sbjct 10117 AATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTATTAT 10176 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 || ||||||||||||||||| | | || || | ||| |||||||| ||| |||| || Sbjct 10177 GCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGGTGT 10236 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 65941 ||| ||||| || || | ||| || || || ||||| | || || ||||| | | Sbjct 10237 ACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA-ACC 10294 Query 65942 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 66001 || ||| | ||| || ||| ||| ||| || ||| | || || || |||||||| Sbjct 10295 GTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCAAAC 10353 Query 66002 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 66061 || || | || | || | || || | || ||||| ||| | | | | || Sbjct 10354 ATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAAC 10413 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 || || |||||| | |||| ||||| | || |||| | |||||| | |||| || Sbjct 10414 TCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATC 10473 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || |||| ||||| ||| | | ||| | || | | |||||| | |||||| ||||| Sbjct 10474 TTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTC 10533 Query 66182 CAAGTATATGGCCATA 66197 || || || |||||| Sbjct 10534 TAAATAAATTGCCATA 10549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168390242240