Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq478 107 2e-18 >seq478 Length=25159 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||| || | ||| ||||| || || || ||||| || Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTA 21686 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| ||||||||||||||| | |||| | || ||||| || ||| Sbjct 21687 AGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGT 21746 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||||| | ||| | | ||| | | ||| || Sbjct 21747 ATTCCTTCTTTGTC-TTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTAC 21805 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | ||||||||| ||||||||||| Sbjct 21806 GTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060676371200