Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 291 1e-73 seq504 242 5e-59 seq466 239 6e-58 >seq2 Length=91783 Score = 291 bits (322), Expect = 1e-73 Identities = 608/895 (68%), Gaps = 17/895 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 |||||| |||| | | | ||| || || ||||| ||||| ||| | || |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAA 49786 |||||| ||||| || ||||| ||| ||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 | |||||||| || |||||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || || || | | || | |||||||||| || || |||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 || || || | | | || | || | ||||| || | | |||||| |||| Sbjct 37273 TA--TC-AAGAATGTGTGG---CGATTTATTAATTAAATATTGATTTAGCAAACAAGCGA 37220 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || || |||| || || || ||| ||||| ||| || || || || || || |||| Sbjct 37219 AGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCA 37160 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || || | || || ||||| || || |||||||||| || ||||| || ||||||| Sbjct 37159 TAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTT 37100 Query 50087 CTACTGCGGCAAAGGCAACAAGTC-TCTCTCCATAACTGGCGCTGTCATGT---ATCCAC 50142 |||| ||||| |||| | | | || | | || | |||| | ||||| Sbjct 37099 CTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTT-TCATCTTTAATCCAT 37041 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || | ||||| || || |||||||||| ||| || || || ||| |||||||||||| Sbjct 37040 TTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGA 36981 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 | ||||||||| |||| ||| ||||| ||| || || | |||||| || | Sbjct 36980 TGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTA 36921 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT--GCA 50320 ||||| ||||| ||||| | |||||||| || || || | || || |||| | || Sbjct 36920 TGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTCA 36863 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 |||| || |||| ||| ||||||| | || || || || || || ||||||| Sbjct 36862 CTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAA 36803 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGA 50440 | || || | || | ||||| | | |||| || ||| | ||||||||| Sbjct 36802 ATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCATTTC 36743 Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 | || || || ||| |||||||| || ||||| ||||||| ||| || |||||||||| Sbjct 36742 TGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACA 36683 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 | | ||| ||||||||||||| || || || | |||| | || | | |||||| Sbjct 36682 TCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 >seq504 Length=119805 Score = 242 bits (268), Expect = 5e-59 Identities = 869/1339 (65%), Gaps = 30/1339 (2%) Strand=Plus/Plus Query 78753 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAG 78812 || ||| ||||| || ||||||| ||| | || | || ||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 78813 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 78871 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 78872 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 78928 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 78929 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTG 78985 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 78986 CCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 79045 | |||||| || || || || | | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 79046 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 79105 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 79106 TATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAG 79165 | |||| || | |||||||||| |||||||||| ||| || || ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 79166 GTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCC 79224 | | || | | ||||||||| | || | | | || || ||| | || | ||||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 79225 CAATCCCAAAGATCAGACGGGACAACATTC---CAAAGATCATATTGTAGAATACCGTTA 79281 | | || | || || || || | ||| | || | ||| || ||| Sbjct 9702 ATTTTTCTAAATTTGGA----ACTTTTTTTTTGCATAACTCAAAGTGAAAAATTCCTTTA 9757 Query 79282 CT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACT 79340 || | || | || |||| | ||||||||||||| || | | || || | |||| ||| Sbjct 9758 CTTAACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACT 9814 Query 79341 --CGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 79398 | | || | || |||||||| ||||| || || || ||| | |||| || Sbjct 9815 GACTCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCA 9874 Query 79399 TCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 79458 | | | || ||||| ||||| | || | ||| || ||||| |||||||| ||||| Sbjct 9875 TTTTGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCT 9934 Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518 || || ||||||| ||||| ||| ||| | |||| | ||||||| | || Sbjct 9935 ATTCCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTA 9994 Query 79519 ATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGA 79578 | || ||| ||||| ||||| || ||| ||||| || | | || | | Sbjct 9995 CTGTCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCA 10054 Query 79579 AAATCAAATCGTCCATCTATTACAAACATGTTCAACGCGA-CAGATGCCAGATTACAAAC 79637 ||||||||| ||| ||| ||||||| | || || | | || |||||| |||||||| Sbjct 10055 AAATCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAAC 10113 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || | ||||| ||| | ||||| |||||||| | ||| | || | || || Sbjct 10114 AGCAATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTAT 10173 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 | || ||||||||||||||||| | | || || | ||| |||||||| ||| | || Sbjct 10174 TATGCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGG 10233 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 79817 ||||| ||||| || || | ||| || || || ||||| | || || ||||| | Sbjct 10234 TGTACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA- 10291 Query 79818 AGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA 79877 | || ||| | ||| || ||| |||| ||| |||||| | || || || ||||| Sbjct 10292 ACCGTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCA 10350 Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937 |||||| || | || | |||| || || | || ||||| ||| ||| | | Sbjct 10351 AACATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTC 10410 Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 79997 |||| || |||||| | |||| ||||| | || |||| | |||||| | |||| Sbjct 10411 AACTCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAAT 10470 Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || |||| ||||| ||| | | ||| | || | | |||||| |||||| || Sbjct 10471 ATCTTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGG 10530 Query 80058 TTCCAAGTATATGGCCATA 80076 ||| || || || |||||| Sbjct 10531 TTCTAAATAAATTGCCATA 10549 >seq466 Length=27249 Score = 239 bits (264), Expect = 6e-58 Identities = 692/1052 (66%), Gaps = 15/1052 (1%) Strand=Plus/Minus Query 78757 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTG 78816 || |||||||| ||||| | || | ||||||| || ||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 78817 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 78876 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 78877 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 78935 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 78936 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTGCCATAAT 78992 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 78993 CCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 79052 ||| || || || | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 79053 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGG 79112 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| |||| Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 79113 TTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCAC 79172 ||| | | ||||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 79173 CAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA 79232 |||||| |||||||| ||| ||| | ||||| | | || |||||||| ||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 79233 AAGATCAGACG--GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTAT 79290 | | | | | | || | ||| || | || | ||| || |||||| | Sbjct 26374 TCTACCGGTAGTAGAAGAATTTGCCATT--TCCCAGTGGAAAATGCCTTTACTAATTGGT 26317 Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 ||||| | || | |||||| || || | || || || |||||| | || || Sbjct 26316 GATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAA 26257 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || || |||| | ||||| || || | || || || | | |||| || ||| ||| Sbjct 26256 GCACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCA 26197 Query 79411 AATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26196 TAAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGG 26138 Query 79470 TCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 79529 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| Sbjct 26137 CCTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAAC 26078 Query 79530 TTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA-TCAAATC 79588 | |||| ||| | || || ||| || || | |||| | | ||| |||||| Sbjct 26077 TATATTAGCATTTTTAGTTACTATTTTTACAAC-TGATTTAAATAAATTAAAGTCAAATT 26019 Query 79589 GTCCATCTATTACAAACAT-GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCA 79647 ||||| |||||||| | | | ||| | | |||| || || || ||||| ||| Sbjct 26018 CTCCATTAATTACAAATTTCGGTAAACAT-ATACTAGCCAAGTTGCATACTGCTACTTCA 25960 Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | | | | ||||||| ||||| || ||||||||| ||| |||| || || | | Sbjct 25959 TCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAATA 25900 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 || | ||||||||| || || | ||| ||||| | ||| | || ||||||||| Sbjct 25899 TTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGTT 25840 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||||| || || || ||||| || |||||||| Sbjct 25839 TCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263987599040