Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=91783 Score = 257 bits (284), Expect = 2e-63 Identities = 591/878 (67%), Gaps = 28/878 (3%) Strand=Plus/Minus Query 13580 TTTTTGATATTC--ACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 ||||||||||| ||| ||||||| |||||||| || ||||| ||| | | |||| Sbjct 37512 TTTTTGATATTGTGACT--CTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 13638 TTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAAT 13697 |||||||||||||| || ||||| | || | | ||| ||| |||| | | | Sbjct 37454 TTTTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATT 37395 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 | |||||||||||| | ||| |||||||||||| |||| | | ||||||||| || || Sbjct 37394 AATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 13758 AGTTTTACAGGAATTATATTGG---TTAAAAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 || ||||| || || | || ||| ||||||||| ||||| || || ||||| Sbjct 37334 AGATTTACCGG---TAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTC 37278 Query 13815 ATAATAATTGTAATAATCTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAAC 13872 | ||| || ||| | || |||| ||| || || | | |||| Sbjct 37277 ACTATATC---AAGAATGTGTGGCGATT-----TATTAATTAAATATTGATTTAGCAAAC 37226 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | || || |||||||| | || ||||| ||| ||| | ||| || || || || | | Sbjct 37225 AAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGAC 37166 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | |||| || |||| ||| || |||| ||||||| |||||||| |||| Sbjct 37165 CAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATA 37106 Query 13993 TTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 |||| || || ||| ||||| || || | ||| | || |||| ||||| | Sbjct 37105 TTCCTTCTAC-GCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA 37047 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| ||||| |||| ||| ||||| ||| | || || || |||||| Sbjct 37046 ATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTA 36987 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | || | || || | | || ||| || | ||| || | ||| |||||| Sbjct 36986 AAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATC 36927 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| || || ||||| || |||| ||||| ||||||||||| | ||||| | || Sbjct 36926 TCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAAT-AT 36868 Query 14232 TGT-ACTTCCGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| ||||| | || ||||| || | ||||| | ||||| |||||||| || Sbjct 36867 TGTCACTTC--ATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCG 36810 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14348 ||||||||||| || || ||| |||||||||| |||| || || | | | |||| Sbjct 36809 GCAAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAA 36750 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | || || ||||| ||||| || || ||||| || | | |||||| Sbjct 36749 TCATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTT 36690 Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 |||||||| |||||| || | |||| |||||||| Sbjct 36689 TTATACATCTGCCATATGTCATGATATTTAATAGGAAA 36652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724785822400