Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 266 3e-66 >seq2 Length=91783 Score = 266 bits (294), Expect = 3e-66 Identities = 597/887 (67%), Gaps = 20/887 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTC--ACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATA 13425 ||||||||||| ||| ||||||| ||||| || || ||||| ||| | | |||| Sbjct 37512 TTTTTGATATTGTGACT--CTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 13426 TTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAAT 13485 ||||||||||||||||| ||||| || | | ||| ||| |||| | | | Sbjct 37454 TTTTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATT 37395 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 |||||||||||||| | ||| |||||||||||| |||| | | ||||||||| || || Sbjct 37394 AATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 || ||||| || | | | ||| ||||||||| ||||| || || || || | Sbjct 37334 AGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACT 37275 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACG 13663 ||| | || ||||| || |||| ||| || || | | ||||| | Sbjct 37274 ATA---TCAAGAATGTGTGGCGATT-----TATTAATTAAATATTGATTTAGCAAACAAG 37223 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 | || |||||||| | || ||||| ||| ||| | ||| || || || || | || | Sbjct 37222 CGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAG 37163 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| | |||| || |||| ||| || |||| || |||| |||||||| ||||||| Sbjct 37162 GCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTC 37103 Query 13784 CCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 | || || ||| ||||| || || | ||| | || |||| ||||| | | ||| Sbjct 37102 CTTCTAC-GCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTAATC 37044 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| ||||| |||| ||| ||||| ||| | || || || ||||| || Sbjct 37043 CATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAG 36984 Query 13903 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | |||| || || | | || ||| || | ||| || | ||| |||||| ||| Sbjct 36983 AGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCA 36924 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || || |||||||| |||| ||||| |||||||| || | |||||| | ||||| Sbjct 36923 CTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAAT-ATTGT 36865 Query 14023 ACCTCCGAGTAA--AATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 || | | || ||||| || | || || | |||||||||||||| || |||| Sbjct 36864 CACTTC-ATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAA 36806 Query 14081 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14140 ||||||| || || ||| |||||||||| |||| || || | | | |||||| Sbjct 36805 AAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCAT 36746 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 | || || ||||| ||||| || || ||||| || | | |||||||||| Sbjct 36745 TTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTAT 36686 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 |||| |||||| || | |||| |||||||| | ||| | ||| Sbjct 36685 ACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTT 36639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585593455040