Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 seq504 244 1e-59 seq466 188 1e-42 >seq2 Length=91783 Score = 298 bits (330), Expect = 7e-76 Identities = 611/896 (68%), Gaps = 19/896 (2%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 |||||| |||| | | | ||| || || ||||| || || ||| | || |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAA 41891 |||||| ||||| || ||||| ||| ||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | |||||||| || | ||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || || | | ||| | |||||||||| || || ||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 42012 TAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 || || | ||| | || | || | ||||| || | | |||||| ||| Sbjct 37273 TA--TCAAGAATGTGTGG-----CGATTTATTAATTAAATATTGATTTAGCAAACAAGCG 37221 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || || || |||| || ||||| ||| ||||||||| || || || || || || ||| Sbjct 37220 AAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGC 37161 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || || || | || || ||||| || || |||||||||| || ||||| || |||||| Sbjct 37160 ATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCT 37101 Query 42191 TCTACTGCCGCAAAGGCAATAAGTC-TCTCTCCATAACCGGCACTGTCATGT---ATCCA 42246 ||||| |||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37100 TCTACGCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCA 37042 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 || | ||||| || || |||||||||| ||| || || || ||| ||||||||||| Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 || ||||||||| |||| ||| ||| | ||| || || | |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT-GT- 42424 |||||| ||||| ||||| | |||||||| || || || | || || ||| | || Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTC 36864 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 ||||| || |||| ||| ||||||| |||| || || || || || |||||| Sbjct 36863 ACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544 || || || | || | ||||| ||| |||| | ||||| ||||||||| Sbjct 36803 AATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCATTT 36744 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 | || || || ||| ||||||||||||||||| ||||||| || || ||||||||| Sbjct 36743 CTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATAC 36684 Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 || | ||| || |||||||||| ||| || || | |||| | || | | |||||| Sbjct 36683 ATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 >seq504 Length=119805 Score = 244 bits (270), Expect = 1e-59 Identities = 865/1339 (65%), Gaps = 30/1339 (2%) Strand=Plus/Plus Query 70836 TAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 70895 || ||| |||||||| ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 70896 TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAG-G 70954 ||| ||||| | || | || | | | ||| | |||||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 70955 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 71011 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 71012 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTG 71068 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 71069 CAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 71128 |||||||| ||||| || || | | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 71129 GATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGG 71188 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 71189 TATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 71248 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 71249 GTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAG-AGATTCC 71307 | | || | ||||||||||| | ||||| | || || ||| | || | ||||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 71308 CAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA---TGCCGTTA 71364 || | || | ||| || | | || ||| Sbjct 9702 ATTTTTCTAAATT----TGGAACTTTTTTTTTGCATAACTCAAAGTGAAAAATTCCTTTA 9757 Query 71365 CT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACT 71423 || | || | || ||||| |||| || || || || | || || || |||||| ||| Sbjct 9758 CTTAACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACT 9814 Query 71424 --CGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 71481 | | || | || ||||||||| ||||| || || || ||| | |||| || Sbjct 9815 GACTCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCA 9874 Query 71482 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCA 71541 | | || ||||| ||||| | || | ||| || ||||| |||||||| || || Sbjct 9875 TTTTGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCT 9934 Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 || || ||||||| |||||| ||| ||| | |||| | ||||||| | || Sbjct 9935 ATTCCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTA 9994 Query 71602 ATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGA 71661 | || ||| ||||| |||||||| ||| ||||| || | | || | | Sbjct 9995 CTGTCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCA 10054 Query 71662 AAATCAAATCTCCCATCTATTACAAACACGTTCAAGGCAA-CAGATGCCAGATTACAAAC 71720 ||||||||| | || ||| ||||||| |||| ||| ||| || |||||| |||||||| Sbjct 10055 AAATCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAAC 10113 Query 71721 GGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGAT 71780 || | ||||| ||||| ||||| || ||||| | ||| | ||| | || || Sbjct 10114 AGCAATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTAT 10173 Query 71781 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 | || ||||||||||||||||| | | || || | ||| |||||||| || | || Sbjct 10174 TATGCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGG 10233 Query 71841 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 71900 ||||| ||||| || || | ||| || || || ||||| | || || ||||| | Sbjct 10234 TGTACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA- 10291 Query 71901 ATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA 71960 | || ||| | ||| || ||| |||| ||| |||||| | || || || ||||| Sbjct 10292 ACCGTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCA 10350 Query 71961 AGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT 72020 | ||| || | || | || || || || | |||||||| ||| ||| | | Sbjct 10351 AACATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTC 10410 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||| || |||||| | |||| ||||| | || |||| | |||||| | |||| Sbjct 10411 AACTCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAAT 10470 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || |||| ||||| ||| | | ||| | || | | |||||| |||||| || Sbjct 10471 ATCTTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGG 10530 Query 72141 TTCCAAGTATATGGCCATA 72159 ||| || || || |||||| Sbjct 10531 TTCTAAATAAATTGCCATA 10549 >seq466 Length=27249 Score = 188 bits (208), Expect = 1e-42 Identities = 678/1054 (64%), Gaps = 19/1054 (2%) Strand=Plus/Minus Query 70840 TAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 70899 || ||||| || ||||| | || | ||||||| |||||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 70900 GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCC 70959 | || |||| | || | | ||| | || ||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 70960 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 71018 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 71019 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTGCAATAAT 71075 || ||||| || ||||||| || | || || || ||||| | | | ||| ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 |||||| || || | ||| | || || ||||| | | | |||| Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | || |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 |||| | |||||||| ||||| | | ||||| | | || |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA-TGCCGTTACTAGCGTATG 71374 | ||| | ||| || | |||| |||||| || Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 |||| ||| | || || || || | ||| || || |||||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||| |||| | ||||| || || | || || || | | |||| | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 71495 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 | || |||| |||| | | ||| | || |||| ||||||||| || | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 || ||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA-TCAAATCT 71672 |||| |||| | || || ||| || || | |||| | | ||| |||||| Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAAC-TGATTTAAATAAATTAAAGTCAAATTC 26018 Query 71673 CCCATCTATTACAAACACGTTCAAGGCAACAGAT----GCCAGATTACAAACGGCTACCT 71728 |||| |||||||| ||| | |||| || |||| || || || ||||| | Sbjct 26017 TCCATTAATTACAAAT---TTCG-GTAAACATATACTAGCCAAGTTGCATACTGCTACTT 25962 Query 71729 CATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 ||| | | || ||||||| |||||| || || || ||| ||| | || || || | Sbjct 25961 CATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAA 25902 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 ||| | ||||||||| || || | ||| ||||| | || | || ||||||| Sbjct 25901 TATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAG 25842 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||||| || || || ||||| || |||||||| Sbjct 25841 TTTCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134703367360