Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq35 138 8e-28 seq478 96.9 2e-15 >seq35 Length=73508 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||| ||||| ||||| ||||||||||| | || || ||||||||||| ||||| || | Sbjct 17264 AACCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCAT 17205 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | | | |||| |||||||| || ||||||||||| | | || || || | | Sbjct 17204 TAAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTG 17145 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 ||| ||||||||||||| ||||| || || | | | || ||| |||| || | Sbjct 17144 GTATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAA 17085 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | ||||||||||| || || | ||||| |||||||||||||| Sbjct 17084 CATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 >seq478 Length=25159 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || | ||||| || || ||||| || ||||| ||||| | Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACT- 21685 Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || |||| || | ||||| || ||||| ||||| | || || || | | Sbjct 21686 AAGTGTC-CTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTG 21744 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 ||| |||||||| ||| |||||| ||| || | ||| | || | ||| | Sbjct 21745 GTATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTA 21804 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| ||||| || |||| || || |||||||||||||| Sbjct 21805 CGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775282415328