Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=91783 Score = 221 bits (244), Expect = 1e-52 Identities = 592/891 (66%), Gaps = 28/891 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||||| ||||||| ||||| || || ||||| ||| |||| ||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||||||||||||| ||||| | | || ||||| | | ||||| | | ||| Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| ||||| ||||| || || || || ||| | | ||| ||||| || || | Sbjct 37392 TAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAAG 37333 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 ||||| || | | | ||| ||| | ||| ||||| || || ||||| | ||||| Sbjct 37332 ATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTAT 37273 Query 13099 GTCTCTTATTACGT-TCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAA 13157 || || || | | | | ||| ||| || || | || ||| || | Sbjct 37272 ATCAAGAAT---GTGTGGCGATTTATTAATTAAATAT-TGATTTAGCAA---ACAAGCGA 37220 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 | ||||| ||||| |||||||| ||| |||| || || || || || ||||| |||| Sbjct 37219 AGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCA 37160 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 |||| |||| || || | ||| || || | ||||| | || |||||||||||||||| Sbjct 37159 TAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTT 37100 Query 13278 CAACTGCTGCAAACGCTATCAACCTT-TCACCATACGTACTATTTTTACTCTCTA-TCCA 13335 | || ||||| || || | | | || | | | | | |||||| ||| || |||| Sbjct 37099 CTACGCACGCAAAAGCAATGACGCGTGTCGCGA-ATG-ATGATTTTTCATCTTTAATCCA 37042 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 || ||||||| ||||| | ||| | || ||| | ||| || ||||| | Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 || ||||||| | ||| |||||||| |||||| ||||| |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 |||||||||||| || |||| ||| || |||||||| || | || ||| ||| || Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATATTGTCAC 36862 Query 13516 TTCGGAGTA--AAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 ||| | || ||||| || |||| || ||||||| || || || || |||||| Sbjct 36861 TTC--ATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 13574 aaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 || || || ||| || |||||| | | |||| || || || ||||||||| Sbjct 36803 AATGCTAAAATATTTG--AAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATC-- 36748 Query 13632 GAAAATCTTT----TGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 | ||| | | || ||| || || || || ||||| || || | | || || Sbjct 36747 --ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTT 36690 Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTT 13738 ||||||||| |||||| || | ||| ||| ||||| | ||| || ||| Sbjct 36689 TTATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTT 36639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979584607472