Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 253 5e-62 seq478 208 2e-48 seq35 172 1e-37 >seq2 Length=91783 Score = 253 bits (280), Expect = 5e-62 Identities = 588/874 (67%), Gaps = 32/874 (4%) Strand=Plus/Plus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 ||| || | ||| ||||||| || | || ||| |||||| |||||| ||| | || Sbjct 36636 AGAAAGGTATGTTTTATTTCCTATTAAATATCATGACATATGGCAGATGTATAAAAAAGC 36695 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA 268815 || | || || ||||| ||||||||||| ||||| || ||| || |||||| Sbjct 36696 CGAGTCATCATTCTGGACGGTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTT 36755 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | ||||| |||||||| ||||| || ||||| | || |||||||| | Sbjct 36756 ATCATTAAATGATAAAGAAAGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTC 36815 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGT-ACAGATTCCTG 268934 |||||||| ||||||| ||| |||| |||| ||| | | || || ||| || | Sbjct 36816 AGATGGTATTGTTAACGCCAATTTAGTTGAGAGATTCGCTAATGAAGTGACA-ATATTAG 36874 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||| | || ||||| ||||| || |||| ||||||||||||||| |||||||| Sbjct 36875 AAGCAAAGTGCTTTTATGGATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATT 36934 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054 ||||||||||| ||||||| ||| | | ||||| | | || ||| | | | Sbjct 36935 CATTATTAATAGATGCTTATATTACAGATCAAGATGAAAAAACACATCTCTTTAATGCGA 36994 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT- 269113 | || ||||| ||| | | ||| ||| |||| ||||| || |||||||| || ||| Sbjct 36995 TAAGTACTATTCCATGTATAAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAAGATG 37054 Query 269114 --AGCGCGCCTTACG-GAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 | | | | || || | || | |||||||||| |||||||| ||||| ||| Sbjct 37055 AAAAATCATCATTCGCGACACGCGTCA-TTGCTTTTGCGTGCGTAGAAGGAATATTTTTT 37113 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || | ||||| | ||||| ||| | ||||| ||||| |||||||| || | ||| Sbjct 37114 TCCGGCGCATTTGCGTCAATCTTCTGGCTAAAGAACAGAGGTCTTATGCCTGGTCTTACT 37173 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT---- 269286 |||||||| ||||| || ||||| ||||| || || || |||||||||||||| Sbjct 37174 TTCTCTAATGAATTAATTTCTAGGGATGAAGGGTTGCATTGTGACTTCGCTTGTTTGCTA 37233 Query 269287 -ATTATTTACTAATT-ATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATA 269344 || | | ||||| || || | || || |||| |||| ||| ||| | Sbjct 37234 AATCAATATTTAATTAATAAATCGC-CACACATTCT--TGATATAGT----GAA-----A 37281 Query 269345 GATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATC 269404 || ||| || |||| | ||||||||||| | | || | | ||||||| Sbjct 37282 GA---AGCGGTAGAAATAGAGAAAGAATTTCTAAGTGTCAGTTTACCGGTAAATCTTATT 37338 Query 269405 GGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTG 269464 || |||||| | || ||| |||||||| | || ||| |||||||||| | | Sbjct 37339 GGGATGAATTGTAAGCTTATGTGTCAATATATTGAATTTGTAGCTGATAGATTATTAATT 37398 Query 269465 TCTTTAGGGTTTAGTAAAAAATATA--ACGTTGAAAATCCGTTTAGTTTTATGGAGAATA 269522 |||||| || ||| | || | || || ||||| || ||||||||| |||| Sbjct 37399 AATTTAGGACTTGAGAAATATTACAATACACTG--AATCCCTTCGATTTTATGGAAAATA 37456 Query 269523 TATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 || |||| ||| || | |||||||| || || Sbjct 37457 TAAGTTTAGTAGGGAAAACCAATTTCTTTGATAA 37490 >seq478 Length=25159 Score = 208 bits (230), Expect = 2e-48 Identities = 186/233 (80%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||||| || | ||||||||||| ||| ||||||||| ||||| || ||| Sbjct 21625 TTCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCAC 21684 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || ||||| ||||| || ||||| ||||||||||| | ||||||||||| || | Sbjct 21685 TAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTG 21744 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 ||||||||||||| || ||||| || |||||||||||||| | || || ||| |||| Sbjct 21745 GTATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTA 21804 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | |||| |||||||| || || || || |||||||||||||| ||||||||| Sbjct 21805 CGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTTG 21857 >seq35 Length=73508 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||| || ||| |||||| ||||| ||||||||| Sbjct 17262 CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTA 17203 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || ||||| | ||| || || ||||| || || ||||||||||| || ||| Sbjct 17202 AGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGT 17143 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| || || || || ||||||||||||| | ||| | ||||| || Sbjct 17142 ATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACA 17083 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||| || || || || ||||| ||||||||||| |||||| Sbjct 17082 TCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCATT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390492771488