Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq515 181 1e-40 seq1 102 1e-16 >seq515 Length=119125 Score = 181 bits (200), Expect = 1e-40 Identities = 272/384 (71%), Gaps = 13/384 (3%) Strand=Plus/Plus Query 164604 TAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 ||||||||| |||||||||||| | || || ||||| | || || |||| ||| | Sbjct 14435 TAAAATTGTGAATGGTCCTGAAATTTTAAATAAATACATTGGACAGAGTGAAGAAAATAT 14494 Query 164664 TAGAAAGTTGTTTCAGGAGGCTGAAGAAGAAC--AAAAGAAAGCAGGTTTAGCTAGTAAA 164721 ||||| || ||| | || || ||||||||| |||| || | | | |||| | Sbjct 14495 AAGAAATTTATTTAAAGATGCAGAAGAAGAATGGAAAATTAAAAAAGAGGA--TAGTGGA 14552 Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATATT 164781 || ||| | || |||||||||| ||||||||| |||| |||||| | ||| | || Sbjct 14553 TTGCATATCATAATTTTTGATGAAATAGATGCTATTTGTAAAAAAAGGGGTAGTTCTACA 14612 Query 164782 A-TTCATG--------ATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAA 164832 | ||| | || ||| |||||||| || ||| |||||| |||||||| ||| Sbjct 14613 AATTCGGGGGTAGGAGATCAAGTTGTTAATCAATTACTTAGTAAAATGGATGGTGTTGAA 14672 Query 164833 TCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCT 164892 || ||| | ||| || || | | || ||||| || ||| || ||||||||||||||| Sbjct 14673 TCTTTAGAAAATGTTCTAGTAATTGGAATGACTAATAGACTAGACTTAATTGATGATGCT 14732 Query 164893 TTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGA 164952 ||||||||||||||| |||| ||| | | |||||||| ||||| ||| |||||| Sbjct 14733 TTATTACGACCTGGTAGATTTGAAATACATTTAGAAATATCTTTACCGGACGAAGAAGCG 14792 Query 164953 CGCCTTCAAATTTTAAAAGTTCAT 164976 | | |||| || ||| ||||| Sbjct 14793 AGAAATGAAATATTTAAAATTCAT 14816 >seq1 Length=193190 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | || ||||| || || ||| || |||| |||||||| ||||| || Sbjct 75609 TAAAGTAAAGGTAAGAAGTTGTAGAATTCCACAAATGGGTGATAAATTTGCATCAAGACA 75550 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 ||| |||||||| ||| || || | | ||||||||||||||| |||||| || Sbjct 75549 TGCGCAAAAAGGTACAGTAGGAATAACATTAAATCAAGAAGATATGCCATTTACTTCTGA 75490 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||||||||| ||| |||||||||| || |||||| | || || ||||||| Sbjct 75489 AGGTATAGTGCCAGATATTATTATTAATCCTCATGCTATACCTAGCAGAATGAC 75436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868007657600