Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq35 104 2e-17 seq478 100 3e-16 >seq35 Length=73508 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||||||||| ||||||||| ||| ||||| | |||||| || | Sbjct 17262 CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTA 17203 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| || || || |||| || | ||| || |||||||| || Sbjct 17202 AGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGT 17143 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | ||||| ||||| || | | || || | | || || Sbjct 17142 ATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACA 17083 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || |||||||| || || || || ||||| || ||||| Sbjct 17082 TCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 >seq478 Length=25159 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| |||| || || | || |||||| ||| || || | || ||||| || Sbjct 21626 TCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACT 21685 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | || | ||| || |||||||| || |||| || ||||| || |||||||| || Sbjct 21686 AAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGG 21745 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||||||||| | |||||| || || || | | | |||| || || Sbjct 21746 TATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTAC 21805 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | || || |||||||| || || ||||| ||||| || ||||| Sbjct 21806 GTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288196448960