Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 >seq2 Length=91783 Score = 264 bits (292), Expect = 1e-65 Identities = 593/888 (67%), Gaps = 24/888 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATC--ACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||||||||| | ||| ||||||| || || ||||| || || ||| | || |||| Sbjct 37512 TTTTTGATATTGTGACT--CTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 21242 GATTCCATAAAATCAAATGGATTTTCAG---ATTTAAATATTTTATTACAACCCAGTTCT 21298 |||||||||||| || ||||| ||| ||| ||||||| | | || | | Sbjct 37454 TTTTCCATAAAATCGAAGGGATT--CAGTGTATTGTAATATTTC-TCAAGTCCTAAATTA 37398 Query 21299 GATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCG 21358 |||||||||||| ||||||||||| |||||||||||||| | | ||||||||| || Sbjct 37397 ATTAATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCA 37338 Query 21359 ATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418 || | ||||| || | | | | ||| ||| ||||| || ||||| Sbjct 37337 ATAAGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTC 37278 Query 21419 ATTATATTTATTATCCTAG---ATGTACTAGGGGGATACAATAATTGTTTAAACATCAAA 21475 | ||||| | || | || || || || |||| | |||| |||| Sbjct 37277 ACTATATCAAGAATGTGTGGCGATTTATTA-----ATTAAATATTGATTTAG----CAAA 37227 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || || ||||||||||| |||||||||||| |||||||||||||| || || | | Sbjct 37226 CAAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGA 37167 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | ||||| || |||| ||| || |||||||||||||| || ||||| || Sbjct 37166 CCAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAAT 37107 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 || || || ||| ||||| |||| | ||| || ||| |||| || ||| Sbjct 37106 ATTCCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA 37047 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 |||||||| |||||| | || || | ||| ||||| ||| ||| || || || Sbjct 37046 ATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTA 36987 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||||| ||||||||||| ||| || || |||||| Sbjct 36986 AAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATC 36927 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||| ||| ||||||||||| |||| |||||||| ||||| || |||| ||| || || Sbjct 36926 TCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCT-AATAT 36868 Query 21836 TG-AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 || || || | |||| | | | || || | || || || ||||| ||||| Sbjct 36867 TGTCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGC 36808 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 ||||||||| || |||||| ||||| |||| ||| ||||| ||||| | |||||| Sbjct 36807 AAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATC 36748 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | || | || ||| |||||||| ||||| || | || ||||| Sbjct 36747 ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 |||||| ||| || |||| |||| | || ||||||| ||| |||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCT 36640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897236264640