Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 273 3e-68 seq466 201 1e-46 seq504 187 3e-42 >seq2 Length=91783 Score = 273 bits (302), Expect = 3e-68 Identities = 610/900 (68%), Gaps = 27/900 (3%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 |||||| |||| | | | ||| || || ||||| ||||| ||| | || |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAA 33130 |||||| ||||| || ||||| ||| ||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | |||||||| || || ||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || || | | || | |||||||||| || || |||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 || || || | | | || | || | ||||| || | | |||||| |||| Sbjct 37273 TA--TC-AAGAATGTGTGG---CGATTTATTAATTAAATATTGATTTAGCAAACAAGCGA 37220 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || || |||| || || || ||| ||||| ||| || || || || || || |||| Sbjct 37219 AGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCA 37160 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || || | || || ||||| || || || || |||| || ||||| || ||||||| Sbjct 37159 TAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTT 37100 Query 33431 CTACTGCA-GCAAAGGCAATAAGTC-TCTCTCCATAACCGGCGCTGTCATGT---ATCCA 33485 |||| ||| ||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37099 CTAC-GCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCA 37042 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || | ||||| || || |||||||||| ||| || || || ||| ||||||||||| Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 || ||||||||| |||| ||| ||||| ||| || || | |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT-CTGT- 33663 |||||| ||||| ||||| | |||||||| || || || | || || |||| ||| Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTC 36864 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 ||||| || |||| || | ||||| | || || || || || || |||||| Sbjct 36863 ACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT----TCCAATC 33779 || || || | || | ||||| ||| |||| | | | | || || |||||| Sbjct 36803 AATGCTAAAATATTTGAAATAAAGTATCTTTCTT----TATCATTTAATGATAACCAATC 36748 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33839 ||| | || || || ||| |||||||| || ||||| ||||||| ||| || ||||| Sbjct 36747 ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 33840 ATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 |||||| | ||| ||||||| ||||| || || || | |||| | || | | |||||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 >seq466 Length=27249 Score = 201 bits (222), Expect = 1e-46 Identities = 679/1053 (64%), Gaps = 17/1053 (2%) Strand=Plus/Minus Query 62034 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62093 || |||||||| ||||| | || | ||||||| |||||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 62094 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62153 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 62154 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 62212 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 62213 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTGCCATAAT 62269 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 62270 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62329 ||| || || ||| | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 62330 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62389 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 62390 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62449 ||| | | |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 62450 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62509 |||||| |||||||| ||| ||| || ||||| | | || |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 62510 AAGATCCGACGGTACAA-CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62568 | ||| ||| || || | ||| || ||||| | Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 |||| ||| | || || || || | |||||||| |||||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 |||| |||| | ||||| || || | || || || | | |||| | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 62689 ATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 62808 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62867 |||| |||| | | || ||| || || || | | ||| |||||| Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAACTGATTTAAATAAATTAAAGTCAAATTCT 26017 Query 62868 CCATCTATTACAAACATGTTCAAGGCAACAGAT----GCCAGATTACAAACGGCTACCTC 62923 |||| |||||||| || | |||| || |||| || || || ||||| || Sbjct 26016 CCATTAATTACAAA----TTTCGGTAAACATATACTAGCCAAGTTGCATACTGCTACTTC 25961 Query 62924 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 62983 || | | | ||||||| || || || || || ||| ||| | || || || | Sbjct 25960 ATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAAT 25901 Query 62984 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63043 ||| | ||||||||| || || | ||| ||||| | ||| | || |||||||| Sbjct 25900 ATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGT 25841 Query 63044 TTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 |||||| || || || ||||| || |||||||| Sbjct 25840 TTCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 >seq504 Length=119805 Score = 187 bits (206), Expect = 3e-42 Identities = 852/1336 (64%), Gaps = 24/1336 (2%) Strand=Plus/Plus Query 62030 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62089 || ||| ||||| || ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 62090 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 62148 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 62149 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 62205 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 62206 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTG 62262 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 62263 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 62322 | |||||| || || || |||| | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 62323 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 62382 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 62383 TATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 62442 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 62443 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCC 62501 | | || | | ||||||||| | || | || | || || ||| | || | |||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 62502 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62561 || | || | || | | | | ||| || ||||| Sbjct 9702 ATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGT-GAAAAATTCCTTTACTT 9760 Query 62562 G-CGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT--C 62618 || | || ||| | |||| || || || || | | | || |||||| ||| | Sbjct 9761 AACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACTGAC 9817 Query 62619 GCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC 62678 | || | || |||||||| ||||| || || || ||||| |||| || | Sbjct 9818 TCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCATTT 9877 Query 62679 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATA 62738 | || ||||| ||||| | || | ||| || || || |||||||| ||||| || Sbjct 9878 TGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCTATT 9937 Query 62739 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 62798 || ||||||| ||||| ||| ||| | |||| | ||||||| | || | Sbjct 9938 CCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTACTG 9997 Query 62799 TCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62858 || ||| ||||| |||||||| || ||||| || | | ||| | |||| Sbjct 9998 TCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCAAAA 10057 Query 62859 TCAAATCGCCCATCTATTACAAACATGTTCAAGGCAA-CAGATGCCAGATTACAAACGGC 62917 |||||| || ||| ||||||| | || ||| ||| || |||||| |||||||| || Sbjct 10058 TCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAACAGC 10116 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 | ||||| ||| | ||||| ||||| || | ||| | ||| | || || | Sbjct 10117 AATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTATTAT 10176 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 || ||||||||||||||||| | | || || | ||| |||||||| ||| |||| || Sbjct 10177 GCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGGTGT 10236 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63097 ||| ||||| || || | ||| || || || ||||| | || || ||||| | | Sbjct 10237 ACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA-ACC 10294 Query 63098 TTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63157 || ||| | || || ||| ||| ||| || ||| | || || || |||||||| Sbjct 10295 GTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCAAAC 10353 Query 63158 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63217 || || | || | || | || || | || ||||| ||| | | | | || Sbjct 10354 ATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAAC 10413 Query 63218 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63277 || || |||||| | |||| ||||| | || |||| | |||||| | |||| || Sbjct 10414 TCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATC 10473 Query 63278 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63337 || |||| ||||| ||| | | ||| | || | | |||||| |||||| ||||| Sbjct 10474 TTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTC 10533 Query 63338 CAAGTATATGGCCATA 63353 || || || |||||| Sbjct 10534 TAAATAAATTGCCATA 10549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943026253760