Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq478 109 5e-19 seq35 109 5e-19 >seq478 Length=25159 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| ||||| |||||||| || |||||||| ||||| | || ||||| Sbjct 21856 AAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCT 21797 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||| | | |||||| |||||| || |||||||| | || ||| Sbjct 21796 AATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGAT 21737 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || ||| | |||| ||| || ||||| | ||||||| | || | ||||| Sbjct 21736 CAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTAC 21677 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || || || ||||| |||| ||||| | || || ||||| |||||||||| Sbjct 21676 AATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAA 21624 >seq35 Length=73508 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| |||||||| ||||| | || || | | Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | ||||| ||||| ||||||||||| | || ||||| Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||| | ||| || || ||||| ||||||| | ||| | || ||||| Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAA 17214 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||| |||| | ||| ||||||||||||| |||| || Sbjct 17215 CATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG 17262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341221440320