Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 316 3e-81 seq466 201 1e-46 seq504 196 6e-45 >seq2 Length=91783 Score = 316 bits (350), Expect = 3e-81 Identities = 620/904 (69%), Gaps = 33/904 (4%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 |||||| |||| | | | ||| || || ||||| ||||| ||| |||| |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAA 32487 |||||| |||||||| ||||| ||| ||| ||| | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 | |||||||| || |||||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || || || | | ||| | |||||||||| || || ||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 32608 TAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 || || | ||| | || | || | ||||| || | | |||||| ||| Sbjct 37273 TA--TCAAGAATGTGTGG-----CGATTTATTAATTAAATATTGATTTAGCAAACAAGCG 37221 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 || || || || | || || || ||| ||||||||| || || || || || || ||| Sbjct 37220 AAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGC 37161 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 || || || | || || ||||| || || |||||||||| || ||||| || |||||| Sbjct 37160 ATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCT 37101 Query 32787 TCTACTGCCGCAAAGGCAATAAGTC-TCTCTCCATAACCGGCGCTGTCATGT---ATCCA 32842 ||||| |||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37100 TCTACGCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCA 37042 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || | ||||| || || |||||||||| ||| || || || ||| ||||||||||| Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 || ||||||||| |||| ||| ||| | ||| || || | |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT-CTGT- 33020 |||||| ||||| ||||| | ||||||||| || ||||| | || || |||| ||| Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTC 36864 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 ||||| || |||| || ||||||| | || || || || || || |||||| Sbjct 36863 ACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT----TCCAATC 33136 || || || | || | ||||| ||| |||| | | | | || || |||||| Sbjct 36803 AATGCTAAAATATTTGAAATAAAGTATCTTTCTT----TATCATTTAATGATAACCAATC 36748 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 ||| | || || || ||| |||||||| || ||||| ||||||| ||| || ||||| Sbjct 36747 ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT------ATTTGG 33250 |||||| | ||| ||||||||||||| ||| ||||| | |||| | || |||||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 Query 33251 ATTT 33254 |||| Sbjct 36627 ATTT 36624 >seq466 Length=27249 Score = 201 bits (222), Expect = 1e-46 Identities = 680/1053 (65%), Gaps = 17/1053 (2%) Strand=Plus/Minus Query 61889 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 61948 || |||||||| ||||| | || | ||||||| |||||||||||||| | || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 61949 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62008 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 62009 CTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 62067 |||||||| |||| | |||| || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 62068 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGATCCACCATCTGCCATAAT 62124 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 62125 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62184 ||| || || ||| | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 62185 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62244 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 62245 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62304 ||| | | |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 62305 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 |||||| |||||||| ||| ||| || ||||| | | || |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 62365 AAGATCCGACGGTACAA-CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62423 | ||| ||| || || | ||| || ||||| | Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 |||| ||| | || || || || | |||||||| |||||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 |||| |||| | ||||| || || | || || || | | | || | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 62544 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 62663 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62722 |||| |||| | | || ||| || || || | | ||| |||||| Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAACTGATTTAAATAAATTAAAGTCAAATTCT 26017 Query 62723 CCATCTATTACAAACATGTTCAATGCAACAGAT----GCCAGATTACAAACGGCTACCTC 62778 |||| |||||||| ||| | |||| || |||| || || || ||||| || Sbjct 26016 CCATTAATTACAAA---TTTCGGT-AAACATATACTAGCCAAGTTGCATACTGCTACTTC 25961 Query 62779 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 62838 || | | | ||||||| || || || || || ||| ||| | || || || | Sbjct 25960 ATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAAT 25901 Query 62839 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 62898 ||| | ||||||||| || || | ||| ||||| | ||| | || |||||||| Sbjct 25900 ATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGT 25841 Query 62899 TTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 |||||| || || || ||||| || |||||||| Sbjct 25840 TTCAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 >seq504 Length=119805 Score = 196 bits (216), Expect = 6e-45 Identities = 854/1336 (64%), Gaps = 24/1336 (2%) Strand=Plus/Plus Query 61885 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 61944 || ||| ||||| || ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 61945 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 62003 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 62004 CTCCCCTGTCTGCAGCCATTTTTATAAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 62060 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 62061 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATGGATCCACCATCTG 62117 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 62118 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 62177 | |||||| || || || |||| | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 62178 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 62237 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 62238 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 62297 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 62298 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCC 62356 | | || | | ||||||||| | || | || | || || ||| | || | |||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 62357 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62416 || | || | || | | | | ||| || ||||| Sbjct 9702 ATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGT-GAAAAATTCCTTTACTT 9760 Query 62417 G-CGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT--C 62473 || | || ||| | |||| || || || || | | | || |||||| ||| | Sbjct 9761 AACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACTGAC 9817 Query 62474 GCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCC 62533 | || | || |||||||| ||||| || || || ||||| |||| || | Sbjct 9818 TCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCATTT 9877 Query 62534 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 62593 | || ||||| ||||| | || | ||| || ||||| |||||||| ||||| || Sbjct 9878 TGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCTATT 9937 Query 62594 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 62653 || ||||||| ||||| ||| ||| | |||| | ||||||| | || | Sbjct 9938 CCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTACTG 9997 Query 62654 TCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62713 || ||| ||||| |||||||| || ||||| || | | ||| | |||| Sbjct 9998 TCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCAAAA 10057 Query 62714 TCAAATCGCCCATCTATTACAAACATGTTCAATGCAA-CAGATGCCAGATTACAAACGGC 62772 |||||| || ||| ||||||| | || || ||| || |||||| |||||||| || Sbjct 10058 TCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAACAGC 10116 Query 62773 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 62832 | ||||| ||| | ||||| ||||| || | ||| | ||| | || || | Sbjct 10117 AATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTATTAT 10176 Query 62833 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 62892 || ||||||||||||||||| | | || || | ||| |||||||| ||| |||| || Sbjct 10177 GCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGGTGT 10236 Query 62893 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 62952 ||| ||||| || || | ||| || || || ||||| | || || ||||| | | Sbjct 10237 ACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA-ACC 10294 Query 62953 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 || ||| | ||| || ||| ||| ||| || ||| | || || || |||||||| Sbjct 10295 GTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCAAAC 10353 Query 63013 ATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63072 || || || || | || | || || | || ||||| ||| | | | | || Sbjct 10354 ATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAAC 10413 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || || |||||| | |||| ||||| | || |||| | |||||| | |||| || Sbjct 10414 TCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATC 10473 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 || |||| ||||| ||| | | ||| | || | | |||||| |||||| ||||| Sbjct 10474 TTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTC 10533 Query 63193 CAAGTATATGGCCATA 63208 || || || |||||| Sbjct 10534 TAAATAAATTGCCATA 10549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627754665600