Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq478 127 2e-24 seq35 96.9 3e-15 >seq478 Length=25159 Score = 127 bits (140), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || || ||| | || || | || || ||||| Sbjct 21854 AATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCTAA 21795 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||| | || || | || |||| |||| ||| ||||||||||| || ||||| || Sbjct 21794 TGACTCCATTGAA--AATGTAAAAGCTAAAATTCAA-GACAAAGAAGGAATACCACCAGA 21738 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || ||||| | ||||||| | | || | | ||||| Sbjct 21737 TCAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTA 21678 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 |||||| || |||||| || ||||| |||| |||| |||||||||||||| Sbjct 21677 CAATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAAT 21623 >seq35 Length=73508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||||||||| | || || ||| | || || | || || || || Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||| || | ||| ||||| || |||||||| || ||||| || || Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | |||| ||||| || || ||||| ||||||| | || | || || || Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAA 17214 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATAC 25237 |||||||||||| || | ||||| ||| | || ||||||| || |||||| || Sbjct 17215 CATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG---TTATTAAAC 17271 Query 25238 TATT 25241 |||| Sbjct 17272 TATT 17275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325169284840