Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 232 7e-56 >seq2 Length=91783 Score = 232 bits (256), Expect = 7e-56 Identities = 509/757 (67%), Gaps = 18/757 (2%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 ||||||||||||||||||||||| || || ||| |||| | | ||||||||| || | | Sbjct 37394 AATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 ||| ||| |||| | | | | | || |||||||| ||| | || |||||||||| Sbjct 37334 AGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCA-- 37277 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||| | | | | ||| | ||| | | | ||| | | | || || || Sbjct 37276 ----CTATATCAAGAATGTGTGGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCG 37221 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 ||||| ||| || ||||| || | || || || ||||| ||| || | ||| || Sbjct 37220 AAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGC 37161 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | || |||| ||||| ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 37160 ATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCT 37101 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT---ACTGCTGATC 93274 || ||| ||||| || | | ||| || || || || || | | ||| Sbjct 37100 TCTACGCACGCAAAAGCAATGACGCGTGTCGCGAA---TGATGATTTTTCATCTTTAATC 37044 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG--TAGTGTTTCGATAGCGTTAA 93332 ||||| | ||||| || ||||| || || ||||| || |||| || || || |||| Sbjct 37043 CATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTT--ATCGCATTAA 36986 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | | || || |||| || || | ||| ||||| | |||||||| | Sbjct 36985 AGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCT 36926 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 || ||| | ||| || || || | ||| ||||| || || || | ||||| || Sbjct 36925 CACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATATTG 36866 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 |||||| | || |||||||| || | ||| | || || |||||||| || || |||| Sbjct 36865 TCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAA 36806 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCAATCG 93571 |||| || || |||| ||||| | | | || | ||| ||||| || |||||| Sbjct 36805 AAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATA-ACCAATCA 36747 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 | || | ||||| |||||||| || ||||| || |||| || |||||||| Sbjct 36746 TTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTA 36687 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 ||||| | ||||||||| ||||||| ||| ||||||| Sbjct 36686 TACATCTGCCATATGTCATGATATTTAATAGGAAATA 36650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857069032640