Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq35 136 9e-27 seq478 100 7e-16 >seq35 Length=73508 Score = 136 bits (150), Expect = 9e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || ||||||||||| || |||||||| || || | ||| ||||| ||||| || ||| Sbjct 17232 GTACTTTCTTTTTGAATGTTATAGTCATTAAGTGTTCTTCCATCTTCCAATTGCTTACCT 17173 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || || || || | ||||||| ||| || ||||||||||| || ||||| || || Sbjct 17172 GCAAATATAAGTCTCTGTTGATCTGGTGGTATACCTTCTTTATCTTGTATTTTAGCCTTT 17113 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || |||||||||||||| | || ||| || || | || || || || || || || ||| Sbjct 17112 ACATTTTCTATAGAATCCCCCGGTTCAACATCTAAAGTAATTGTTTTTCCTGTGAGTGTC 17053 Query 288457 TTGACGAATATCTGCATTATGTT---ATTCTAATATTTTTAATA 288497 || || ||||| ||||||| | | || | ||| |||||||| Sbjct 17052 TTTACAAATATTTGCATTAGGGTTAAATGTTTATAATTTTAATA 17009 >seq478 Length=25159 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | || |||||||| || ||||| || || || || | || ||||| Sbjct 21645 ACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTAAGTGTCCTACCATCTTCA 21704 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || || |||| | ||||||| ||| ||||||||||| || || Sbjct 21705 AGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGTATTCCTTCTTTGTCTTGA 21764 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || ||||| || || || | || ||||| || | || || || || Sbjct 21765 ATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACGTCTAAAGTAATAGTTTTT 21824 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || || || ||||| |||||| || Sbjct 21825 CCTGTTAGCGTTTTTACAAATATTTGCATTTTG 21857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646298723408