Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq478 87.8 2e-12 seq35 84.2 2e-11 >seq478 Length=25159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||||||| | || |||||| || || |||||||| | || | Sbjct 21636 AATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTAAGTGTCCTA 21695 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||||||||| || || ||| |||| | | ||| || || || || ||||||||| Sbjct 21696 CCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGTATTCCTTCT 21755 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| |||||| || | | ||| | || || |||| ||| Sbjct 21756 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACGTCTAAAGTA 21815 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || || || || | |||||||| || ||||||||||| Sbjct 21816 ATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTT 21856 >seq35 Length=73508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | ||| | ||| | || ||||||||||||||| || || | || | Sbjct 17253 AATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTAAGTGTTCTT 17194 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| || ||| | || || | ||| || || || || || |||||| Sbjct 17193 CCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGTATACCTTCT 17134 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||||||||| ||||||| || | | ||| || | || || |||| ||| Sbjct 17133 TTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACATCTAAAGTA 17074 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || || || | || ||||| || ||||||||| Sbjct 17073 ATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCATT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641452379840