Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq478 113 4e-20 seq35 86.0 6e-12 >seq478 Length=25159 Score = 113 bits (124), Expect = 4e-20 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 45102 TTTTATT-TTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 |||| || ||||| ||||| | | || || |||||||| | || ||| || || | Sbjct 21613 TTTTCTTCTTATTTCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTA 21672 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 |||| ||||| || | || || ||| || | ||||| || || | ||||||| | Sbjct 21673 TATTGTAATCACTAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCT 21732 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGT 45279 | || || || || || |||||||| ||||||||||| ||| | ||| | || || Sbjct 21733 GTTGATCTGGTGGTATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGT 21792 Query 45280 CGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 | |||||| || || | ||||| ||||| || ||||| ||||||||||| ||||||| Sbjct 21793 CATTAGACTCTACGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCA 21852 Query 45340 T 45340 | Sbjct 21853 T 21853 >seq35 Length=73508 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | ||||| || ||| ||||| || ||||| || | | ||| | | Sbjct 17250 CTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTAAGTGTTCTTCCA 17191 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || ||||| |||| | || || || || || || || ||||||||| Sbjct 17190 TCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGTATACCTTCTTTA 17131 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| || | ||||| | || | || || || | ||||| Sbjct 17130 TCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACATCTAAAGTAATT 17071 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || |||||||| |||||||| Sbjct 17070 GTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000171578560