Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq46 134 5e-26 seq2 123 1e-22 seq504 122 3e-22 seq478 111 6e-19 seq124 107 8e-18 seq246 105 3e-17 seq466 98.7 4e-15 seq35 87.8 7e-12 >seq46 Length=72868 Score = 134 bits (148), Expect = 5e-26 Identities = 193/267 (72%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 364740 GCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGA 364799 ||||||||||||||||| ||||| |||||||||| | |||| ||||||| ||||| Sbjct 16098 GCACAAAATTTTGTTGGTTCAAATAACATAAATTTACTTGTACCAGAAGGACAGTTTGGT 16039 Query 364800 AGTCGAGTAATGGGAGGTAAAGATTCTGCCAGCCCA-CGTTATATTTGGACCAAACTTGA 364858 || ||| || || || ||||||| |||| || |||||||||| || | ||| | Sbjct 16038 TCAAGATTAAAAGGCGGAAAGGATTCTG-CAGCACATCGTTATATTTTTACTTATCTTAA 15980 Query 364859 AAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGA 364918 | | ||||||||||| ||| |||| || |||||| || ||| | |||| Sbjct 15979 TCCTATTACTAGATTAATATTTCATAAATCAGATGATTTAATTTTGAAATATTTAGATGA 15920 Query 364919 TGATGGATTAAT-GGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAA 364977 || | || ||| | | ||||| || | ||| ||||||||||||||||| | || || | Sbjct 15919 AGA-GAATCAATCGATCGAACCAGAGTGGTATGTTCCTATTATTCCTATGGTATTGGTTA 15861 Query 364978 ATGGAGCAACAGGCATTGGTACTGGTT 365004 |||| ||| ||| ||||| || |||| Sbjct 15860 ATGGGGCAGAAGGTATTGGAACAGGTT 15834 >seq2 Length=91783 Score = 123 bits (136), Expect = 1e-22 Identities = 562/870 (65%), Gaps = 61/870 (7%) Strand=Plus/Plus Query 496951 TATTTCCTATTAAATATCATAAAATCTGGGATTTATATaaaaaaaTGGAAGCAGCTTTTT 497010 |||||||||||||||||||| | || ||| | | ||||||||| || || | || | Sbjct 36650 TATTTCCTATTAAATATCATGACATATGGCAGATGTATAAAAAAGCCGAGTCATCATTCT 36709 Query 497011 GGACAGCTGAAGAAATAGATTGGTCTAAAGATAAACATGATTTTAAAAAATTAAATCAAG 497070 |||| | |||||| | ||| || || | | |||||| | ||||||| | Sbjct 36710 GGACGGTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTTATCATTAAAT---G 36766 Query 497071 ATGAACAACGA---TTTATTAAATATGTATTAGCAtttttttCGGCAAGTGATACAATTG 497127 || || || || |||||| | || | |||||||||||| | || ||| |||| Sbjct 36767 ATAAAGAAAGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTCAGATGGTATTG 36826 Query 497128 TAAATATTAATTTAGGAGAAAGATTATCTCATGAAGTTCAACCACTTGAAGCCAAAATTG 497187 | || ||||||| || ||||| || ||||||| | | | ||||| ||| || Sbjct 36827 TTAACGCCAATTTAGTTGAGAGATTCGCTAATGAAGTGACAATATTAGAAGC--AAAGTG 36884 Query 497188 C--TTATACTTTTCAAATGATGATGGAAGGGATCCATAGTGAAGTATATGCACTTCAAAT 497245 | |||| |||||| | || ||| || |||||||| | ||| || | ||| Sbjct 36885 CTTTTATGGATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATTCATTATTAAT 36944 Query 497246 AGAT-AATATAATAGAAGATGTTCAAGA-GAGAAA--AGATATTTTAAATTCAATAGAAA 497301 |||| |||| || | | |||||| || ||| | || | || ||| | ||| | Sbjct 36945 AGATGCTTATATTACA----GATCAAGATGAAAAAACACATCTCTTTAATGCGATAAGTA 37000 Query 497302 CTGTACCCTGTATTAAAGCAAAAACTGATTGGATGTTAAAATGGGTTAAATCTGAAGAAA 497361 || | || ||||| ||| ||| |||| ||| | |||||| ||||| || |||| Sbjct 37001 CTATTCCATGTATAAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAA---GATGAAA 37057 Query 497362 GTTTTGCAACAAGAATGGTGGCACAAGTAATTTCT------------GAAGGATTAtttt 497409 | || | | | | ||| || ||| || |||||| |||||| Sbjct 37058 ------AATCATCATTCGCGACACGCGTCATTGCTTTTGCGTGCGTAGAAGGAATATTTT 37111 Query 497410 ttagtggaagtttttgtg-ctattttttGGTTaaaaaataaaaaTATAATGCCTGGT-TT 497467 || || | |||| | | || || ||| |||| || | | | | ||||||||| || Sbjct 37112 TTTCCGG-CGCATTTGCGTCAATCTTCTGGCTAAAGAACAGAGGTCTTATGCCTGGTCTT 37170 Query 497468 AATCTCATCAAATGAATTAATTGCACGGGATGAAGGAATGCATTGTGATTATAGTATTAT 497527 | | || || |||||||||||| | |||||||||| |||||||||| | | | | Sbjct 37171 ACTTTC-TCTAATGAATTAATTTCTAGGGATGAAGGGTTGCATTGTGACTTCGCTTGTTT 37229 Query 497528 GTTATATCACATGCTTCA-AAATAAACTGTCACAAGAAAAAATTCAACAAATGTTTAAAG 497586 | || |||| || || | |||||| | ||| | |||| | || | |||| Sbjct 37230 GCTAAATCA-ATATTTAATTAATAAATCGCCAC------ACATTCTTGATATAGTGAAAG 37282 Query 497587 ATGCAGTGGAAACAGAAAGAATATTTATTTGTGAAAGCTTACC-ATGCTCCTTATTAGGA 497645 | || || |||| ||| | | |||| | ||| || ||||| | |||||| || Sbjct 37283 AAGCGGTAGAAATAGAGAAAGAATTTCTAAGTGTCAGTTTACCGGTAAATCTTATT-GGG 37341 Query 497646 ATGAATGCGGACCTAATGGAACAATACATTAAATTTGTGGCTGACCAATTAATTATTAAA 497705 |||||| | || ||| ||||| ||| ||||||| ||||| |||| | ||||| Sbjct 37342 ATGAATTGTAAGCTTATGTGTCAATATATTGAATTTGTAGCTGATAGATTATTAATTAAT 37401 Query 497706 TTAGGATATAATAAAATATTTAAAGTAGA--TAATCCATTTACATGGATGGAAGCAATTT 497763 |||||| | | ||||| ||| | || | ||||| || | |||||| ||| | Sbjct 37402 TTAGGACTTGA-GAAATA-TTACAATACACTGAATCCCTTCGATTTTATGGAA--AATAT 37457 Query 497764 CAATT--GAAGGTAAAACTAATTTCTTTGA 497791 | || | ||| ||||| ||||||||||| Sbjct 37458 AAGTTTAGTAGGGAAAACCAATTTCTTTGA 37487 >seq504 Length=119805 Score = 122 bits (134), Expect = 3e-22 Identities = 176/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 96065 AGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCA-TAAGGATAA-AAGTACTTTAC 96122 || ||||| || ||||| || || | |||| ||| |||| ||| ||| |||||| Sbjct 14482 AGTGGATCATCGGGATTGGGATCCTGTAGTAAA--GCAATAAGACTAAGAAGCACTTTAT 14539 Query 96123 TAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAAATTGCACCTGTAG 96182 || | | || || ||||| | |||||||||||| |||||||||||| | | || Sbjct 14540 CGATAGTAAGAGCAGGACTCCACTCATTTTTTAAAATGTCTAAACAAATTTCCC---TAT 14596 Query 96183 TACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGAGGCTTATATGGAT 96242 || ||| || |||||| || ||| ||||| | ||| |||||||||||| |||||| Sbjct 14597 TATAAATGTTACAATGATATATTTTAGTGTTAAAGAAAATCTTAGGAGGCTTAAATGGAT 14656 Query 96243 AGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAGGGTGTTCCTGAAG 96302 |||| ||||||||| || ||||||| || || || || ||||| | | |||| || Sbjct 14657 AGTCAGGAGGAAAAGTTATATCTAATTTAAACACCCCTCCTTCATAAGCAGAACCTGGAG 14716 Query 96303 GGCC 96306 |||| Sbjct 14717 GGCC 14720 Score = 113 bits (124), Expect = 2e-19 Identities = 288/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 501069 TATTTAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAAAAAATACTGGT 501128 |||||||||||| ||| ||||| ||||||||||| || || |||||||||| || Sbjct 10539 TATTTAGAACCTTGGCATAAAGATATTTTTGATTTTTTAGATTTAAGAAAAAATACCGGA 10480 Query 501129 GCCGAATCAGAAAGAGCCCGTGATTTATTTTTA--GCATTATGGGTTTCTGACTTATTTA 501186 ||| ||||| | ||| ||||||| ||||| ||| | ||| ||||||| Sbjct 10479 AGTGAAGATATTAGAGCTAGAGAT--ATTTTTACTGCATTGTGGATAAATGATTTATTTA 10422 Query 501187 TGAATCAGGTTAAATTAAATAATGATTGGTATTTATTTTGTCCAGACAAAGCACCAGGAT 501246 || | ||| | |||| | || |||| |||||||| ||| || | || ||| Sbjct 10421 TGGAAAGAGTTGACAAAAATGAAGAATGGTCATTATTTTGCCCAAACGAGGCTAAAGGTC 10362 Query 501247 TAAATGATGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTATCAGAAGAAA 501306 | ||||||| | || || || | | | | | || ||||||| | ||| ||| Sbjct 10361 TCGATGATGTTTGGGGCGAGGATTTTAATAAATTATACACAAAATATGAAC--GAACAAA 10304 Query 501307 AATNNNNNNNNNNNNNNAAAGCCCGGAAATTATGGGAAGCTATAATGACAGCACAGTTTG 501366 || ||||| | ||||| ||| | || ||||| |||||| | | Sbjct 10303 AA-ATAGAACGGTTGTTAAAGCTAGAAAATTGTGGAAGGCAATAATTGAAGCACAAATAG 10245 Query 501367 AAACTGGTTCACCCtatatgttatataaagataatattaataaaaaatcaaaccagaaaa 501426 |||| ||| |||| || ||| | |||||||||| |||| | | || || ||| Sbjct 10244 AAACAGGTACACCATACATGCTTTATAAAGATACATGCAATAGATTAAGTAATCAACAAA 10185 Query 501427 atataggaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATATTCAGATTCTA 501486 || | || ||||| | | ||||||||||| || ||||| | |||||||| ||| | Sbjct 10184 ATTTGGGCATAATAAAATCATCAAATTTATGCGCAGAAATAATTGAATATTCCGATAAAA 10125 Query 501487 CTGAAACAGCTGCTTGTAA 501505 ||||| |||| |||||| Sbjct 10124 ATGAAATTGCTGTTTGTAA 10106 Score = 93.3 bits (102), Expect = 2e-13 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 501863 TTATCCTACTAAAGAATCTAGAAGAAGTAATATGAGACATCGTCCTATTGGATTAGGAAT 501922 ||||||| |||||| || ||| ||||| | ||||| || ||||||||| |||| | Sbjct 9988 TTATCCTGTAGAAGAATGTAAAAGGAGTAACTTTAGACACCGACCTATTGGAATAGGTGT 9929 Query 501923 ACAAGGATTGGCGGATACTTTAGCACTTTTAAGAGTTCCTTATG-CATCCAAAGCAGCAT 501981 |||||||||||| ||| |||| | ||| | || ||||| || || |||| || Sbjct 9928 ACAAGGATTGGCAGATGCTTTTGTACTAATGCGATATCCTTTTGACAGTCAAA-ATGCTA 9870 Query 501982 TAGATATTAATGAAAAAATATTTGGTATAATTTATCATGCTGCTGTTACCGCTTCAGTAG 502041 |||| | ||| |||||||||| | ||||||| || | ||| || | ||||| | Sbjct 9869 GAGATTTAAATTTTAAAATATTTGAAACAATTTATTATTCCGCTCTTGAAGAGTCAGTTG 9810 Query 502042 ATATTGCAAAAGA 502054 | |||||||||| Sbjct 9809 AACTTGCAAAAGA 9797 >seq478 Length=25159 Score = 111 bits (122), Expect = 6e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || |||||||||||| | || || || || Sbjct 21854 AATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCTAA 21795 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| ||||||| | | ||| ||||||||||| || |||||||| || || ||||| Sbjct 21794 TGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGATCA 21735 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | || ||||| | || ||||| ||||||||||| || || | ||||| || Sbjct 21734 ACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTACAA 21675 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || || | || |||| |||||| | |||||| Sbjct 21674 TATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGA 21629 >seq124 Length=58341 Score = 107 bits (118), Expect = 8e-18 Identities = 355/548 (65%), Gaps = 33/548 (6%) Strand=Plus/Minus Query 407550 TTTA-AAACAGGAGGTAGACCTACTAAATCTATATCAGAAAGATTAAAAGGTAAGTTAGG 407608 |||| ||| | | || ||||| | ||||| || | |||||||||||||| ||| Sbjct 34417 TTTACAAAAAAGTGGAAGACCAATAAAATCCATTAGTGCTAGATTAAAAGGTAAAGAAGG 34358 Query 407609 ACGGGTTCGTAATAATTTAATGGGAAAACGACAAGATTATTGTGCTCGTTCCGTTATTAC 407668 || ||| | ||||||||||||||| || ||||| | ||||| | || || ||||| Sbjct 34357 TCGTGTTAGAGGAAATTTAATGGGAAAAAGAGTAGATTTTAGTGCTAGATCTGTAATTAC 34298 Query 407669 AGGAGATCCTGATGTAAATATTGATGAAATAGGAATACCTTTAGCAGTAGCTAAAAATAT 407728 | |||| | || | | | || ||| | || | || |||| | | || ||||||| Sbjct 34297 ACCAGATGCAAATATTTCTTTAGAAGAAGTTGGTGTGCCATTAGAAATTGC-AAAAATAC 34239 Query 407729 T-ACTTTTCCAGAAATTGTAACACCCCAAAATATAGATGAGTTAAGTAAATTAGTTTTAA 407787 ||||||||||| | | | ||||| | ||||| || |||| | || || | | Sbjct 34238 ACACTTTTCCAGAGACTATTACACCTTACAATATTGAAAGATTAACTCGGTTGGTATCCA 34179 Query 407788 ATGGAAATAAAAAATATCCTGGTGCGAATTTTGTTGTAAGAAAATCAATGGTTAATGGTA 407847 ||||| || |||||||||||||||||| |||| | |||| ||||| Sbjct 34178 ATGGACCAAATGAATATCCTGGTGCGAATT---ACGTAATACGATCA------GATGGTC 34128 Query 407848 AACAAATTACTCAAAAAATTGATCTTCGAATTAGaaaaaaaaCCATTAAATTAGAATATG 407907 | | ||| || ||||| ||| | || ||||||||| | | Sbjct 34127 AGCGAATAGATC--TAAATT----------TTAACAGGGGGGATATAAAATTAGAAGAAG 34080 Query 407908 GAAATATAGTTCATAGACACTTACAGGATGGAGACCCAATTTTATTCAATCGTCAACCTT 407967 | | || ||| | |||||| | || |||| || | | | || ||| | ||||||| Sbjct 34079 GGTACATTGTTGAGAGACACATGCAAAATGGGGATGTAGTACTTTTTAATAGACAACCTT 34020 Query 407968 CTTTACATAAACCTTCTATGATGGGTCATAAGGTACAAGTAGCAAAAACAGATGGTATTA 408027 | ||||||||| || |||||||| ||| || | ||| | || || || Sbjct 34019 CATTACATAAAATGTCAATGATGGGACATTTCGTTCGAGT------TATGGAAGG---TA 33969 Query 408028 ATACTTTTAGAATGAATGTATCTAGTACTGCTCCCTATGGTGCTGATTTTGATGGGGATG 408087 | ||||||||| | ||| || | |||| | || ||| ||| ||||| ||||| || | Sbjct 33968 AAACTTTTAGATTAAATTTAAGTTGTACGTCACCGTATAATGCGGATTTCGATGGAGACG 33909 Query 408088 AAATGAAT 408095 |||||||| Sbjct 33908 AAATGAAT 33901 >seq246 Length=45583 Score = 105 bits (116), Expect = 3e-17 Identities = 173/242 (71%), Gaps = 13/242 (5%) Strand=Plus/Plus Query 420714 ATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTTCGTAAGAA 420773 |||||| ||||||||||| |||||||| |||||||| | | || | | | ||||| Sbjct 27971 ATCAATCCCTCTTCTTCCCGCTCGTCCGCTCATTTGAATATACTCTGC-GCTGGTAAGGT 28029 Query 420774 TC----TTCTACCACAATCAT-CATATTTAGATAATCCAGTAAATACAACAGTTTTTGTA 420828 || || ||| |||| | | ||||| | ||||| | |||| ||| | | Sbjct 28030 GGCGCGTTTTAACACCATCAAACTTTTTTAGCGAG----GTAAAAATTACAGATTTAGCA 28085 Query 420829 GGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTAAtttttt- 420887 |||||||| | ||||| ||||| ||||| ||||| || | |||||| | | || Sbjct 28086 GGCATATTAAGACCAATTGAAAATGTTTCTGTTGCAAAAAGAACTTTTAAAAGCCCTTCC 28145 Query 420888 tGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATACCAGAATGATGATATGC 420947 |||| || |||||||||||||||||| | ||| |||| || |||||||||||| ||| | Sbjct 28146 TGAAATAA-AATTTCAACAATTTCTTTAATAATGGGAAGTAAACCAGAATGATG-TATAC 28203 Query 420948 CA 420949 || Sbjct 28204 CA 28205 >seq466 Length=27249 Score = 98.7 bits (108), Expect = 4e-15 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 502358 AAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTACATCTCA 502417 ||||||||| |||||| ||| | | |||| ||||| |||||| ||||| || Sbjct 26407 AAAATATGGTGTTAGAAATTCTTTATTAATTGCACCTATGCCTACAGCAGGCACATCACA 26466 Query 502418 ACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACTAGAAGAAC 502477 | | || ||| ||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 26467 AATTTTTAATAATAATGAAGCATTTGAACCATTTACTTCTAATATATACACTAGAAGAAC 26526 Query 502478 TTTAGC---AGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTT 502525 ||| || |||||| | | || |||| || | || |||||||| Sbjct 26527 ---AGCTTGTGGAGAATTTCAAATGGTAAATAGGTATCTTATGAATGATTT 26574 Score = 91.5 bits (100), Expect = 6e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 501358 CACAGTTTGAAACTGGTTCACCCtatatgttatataaagataatattaataaaaaatcaa 501417 |||| ||||||||||| ||||||| ||||| |||||||||| ||| ||||| | | Sbjct 25830 CACAAATTGAAACTGGTACACCCTACATGTTGTATAAAGATACTATAAATAATTTAAGTA 25889 Query 501418 accagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATA 501475 | || || ||||| || | ||||||| |||| || | ||| | ||||||||| |||| Sbjct 25890 ATCAAAAGAATATTGGTACAATTAGATGTTCTAACCTCTGTACAGAAATTGTACAATA 25947 >seq35 Length=73508 Score = 87.8 bits (96), Expect = 7e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 ||||| | || || || || ||||| || || ||||| |||||| | ||||||||| | Sbjct 17034 TAATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGG 17093 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 ||| || ||| | | || ||||| |||||||| ||||| || || || |||| Sbjct 17094 GGGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATC 17153 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 |||| | | || || |||| || ||| | |||||||||||||| Sbjct 17154 AACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAAC 17199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975704831753888