Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-28 seq124 111 1e-18 seq1 107 1e-17 seq433 100 2e-15 seq179 95.1 9e-14 >seq2 Length=91783 Score = 143 bits (158), Expect = 2e-28 Identities = 526/809 (65%), Gaps = 40/809 (5%) Strand=Plus/Minus Query 396904 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 396961 ||| ||||||||||||| ||| | | |||| | || |||| ||| | ||||| ||| Sbjct 37491 TTTATCAAAGAAATTGGTTTTCCCTACTAAACTT--ATATTTTCCATAAAATCGAAGGGA 37434 Query 396962 TTATCAACATTGAATTTTTTGCGATAACCAAGATCTACAAGTAATCTGTCAGCAACATAT 397021 || |||| | | ||| | || | || | | |||||| ||||| ||| || Sbjct 37433 TTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAATAATCTATCAGCTACAAAT 37374 Query 397022 TTAATATATTGAGACATTAGTTCAGAATTCATACCAAGAAG-TTTACACGGAAGAGAATC 397080 | |||||||||| |||| || | | ||||||| |||| ||| ||||| ||| | | | Sbjct 37373 TCAATATATTGACACATAAGCTTACAATTCATCCCAATAAGATTTAC-CGGTAAACTGAC 37315 Query 397081 ATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGATTC 397140 | | | |||||||| || ||||| | |||||| | | || | ||| | | Sbjct 37314 ACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTATAT------CAAGAATGTG 37261 Query 397141 TTTCAAACGATTATTCAACAATGAATACATAATACAAGCAAGTTCTACATGTTTGTTTTC 397200 | | | |||| | || || || | | |||||| | || ||| ||| Sbjct 37260 TGGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCGAAGTCACAATGCAACCCTTC 37201 Query 397201 ATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCATTTCTCTAGT 397260 ||| | || ||| |||| ||| || | | | ||||||||||| | | |||| | Sbjct 37200 ATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCATAAGAC------CTCTGTT 37147 Query 397261 TTTTAACCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTACAATAGAGAA 397320 |||| |||||| || || ||||||| || ||| || | |||||||| | || Sbjct 37146 CTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTCTACGCACGCAAA 37087 Query 397321 TGCTACTAATT-TGT-GAGCATAA-GTCTTATCAGATTTAATCCATTTATTACACCAATC 397377 || | | ||| | | || | | || ||| ||||||||||||| ||| || Sbjct 37086 AGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTAATCCATTTAAGTGCCCAGTC 37027 Query 397378 AGCTTTCTTTTTAATACTTGGCATAGTTTTAATAGAATTAATGAGTTTATTTCTCAAAGC 397437 |||||||||||| |||| ||| ||||| | || | ||||| ||| | || | | | Sbjct 37026 AGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGATGTGTTTTTTCATC 36967 Query 397438 ATCATCTTTAACAAATGTAGTCAACATTAGTGAATACATTTCTCCATGAGCATTTTCCAT 397497 | |||| ||| | | | | | | || ||||||||| || | |||| |||||| || Sbjct 36966 TTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTATGAATATTTTCTAT 36907 Query 397498 TGCATATTGGAAACCAT--AAGCACATTCAGCTTCTTTTATTTTCACAACATCAATAAGA 397555 || ||| || |||| |||||| || |||||| |||| |||| ||| | || Sbjct 36906 GGCTACTTGAAATCCATAAAAGCACTTT--GCTTCTAATATTGTCACTTCATTA--GCGA 36851 Query 397556 TTTTCTTTA--ATATTAGCATTAACAATACCATCAGCTGCCGCAAAAAATGCCAATACGT 397613 | ||| | | ||| || |||||||||||||| | || ||||||||||| || | | Sbjct 36850 ATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAATGCTAAAATAT 36791 Query 397614 GCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTCCAATCATTCACATCTTTTG 397673 |||||| | ||| || | ||| | |||||| | ||||||||| ||| | | Sbjct 36790 TTGAAATAAAGTATCTTTCTTTATC-ATTTAATGATAA--CCAATCATT----TCTGTCG 36738 Query 397674 CC----AAATCCACTTCTTCAACTGTCCA 397698 | | ||| |||||||| || ||||| Sbjct 36737 GCAGTTAGATCAACTTCTTCTACCGTCCA 36709 >seq124 Length=58341 Score = 111 bits (122), Expect = 1e-18 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | ||||| | ||| | | |||||| ||| | |||||| ||||||||||| Sbjct 738 TTATCCTCAGCAGTAATATTCAACACACCATTATTATCAACATCAAAGGTGACTTCAATC 797 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 | || |||||||| |||| || || || || |||||||||| ||| | |||| Sbjct 798 TTTGGTACCCCTCTGGGAGCTGGAATAATTCCATCTAAATTAAATGATCCAATCAAATTA 857 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || |||| || || | ||| || ||| | || || || | ||||||||| Sbjct 858 TTTTCCTTAGCTAAAGCTCTGTTACCTTCATAAACATTAATTGTTACAGCTGTTTGATTA 917 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 |||| ||||||||||||| | || |||||| ||||| | | |||||| |||| Sbjct 918 TCTGCATAAGTTGTAAATGTTTCGGTCTTTTTAACTGGAATAGAACTATTTCTAGGAATA 977 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTC 517518 | | || || ||| ||||||||||| Sbjct 978 AGAACAGTTGCAACACCTCCTGCTGTTTC 1006 Score = 102 bits (112), Expect = 6e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905 ||||||| |||||||||||||||| ||||||||||||| ||||||||| | || ||| | Sbjct 34377 AGATTAAAAGGTAAAGAAGGTCGTGTTAGAGGAAATTTAATGGGAAAAAGAGTAGATTTT 34318 Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCT 668965 ||| | | || ||||| | ||| | |||||| || | | ||||||||||| || Sbjct 34317 AGTGCTAGATCTGTAATTACACCAGATGCAAATATTTCTTTAGAAGAAGTTGGTGTGCCA 34258 Query 668966 CTTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTAT 669025 | ||||| |||| | |||||| || | | | ||| | |||||||| Sbjct 34257 TTAGAAATTGCAAAAATACACACTTTTCCAGAGACTATTACACCTTACAATATTGAAAGA 34198 Query 669026 TTGACTCAATTAGTGAAAAATGGTAAAAGAGTATATCCGGGTGCCAATTTTGTAAT 669081 || |||| || || ||||| || | |||||| ||||| |||| ||||| Sbjct 34197 TTAACTCGGTTGGTATCCAATGGACCAAATGAATATCCTGGTGCGAATTACGTAAT 34142 >seq1 Length=193190 Score = 107 bits (118), Expect = 1e-17 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 303977 TAAATGGTGTTGCATCGCCATACACTCCTTTAACTGCACATAGT-TTTCCTAATAAACAT 304035 |||| || |||||||| || | | ||| ||| ||||| ||| ||||| | ||||||| Sbjct 75359 TAAACGGAGTTGCATCTCCTTCTTCGCCTGTAAGAGCACA-AGTCTTTCCCATTAAACAT 75417 Query 304036 TCAATAAGTTGCCCAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAATATCG 304095 |||||||| ||||| |||||||| | | || ||| || |||||| ||||||||||| Sbjct 75418 TCAATAAGATGCCCTATAGTCATTCTGCTAGGTATAGCATGAGGATTAATAATAATATCT 75477 Query 304096 GGAATTA---ATCCAGATTTACTGAATAACATATCTGCTCGATGAGCTTTGTATCCAATG 304152 || | || | |||| | | ||| ||||||| || ||| | | ||| | Sbjct 75478 GGCACTATACCTTCAGA---AGTAAATGGCATATCTTCTTGATTTAATGTTATTCCTACT 75534 Query 304153 GTACCTTTTTGACCTGCTCTTGACGAAAATTTATCACCTACATTGGGAATTCT 304205 ||||||||||| | |||||| | |||||||||||| | | |||||||| Sbjct 75535 GTACCTTTTTGCGCATGTCTTGATGCAAATTTATCACCCATTTGTGGAATTCT 75587 >seq433 Length=33022 Score = 100 bits (110), Expect = 2e-15 Identities = 251/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||| |||||||| ||||| || ||||||||| |||| | |||| || |||| Sbjct 26819 ATTATCCAAATCTTCTCCTCCTAAAAAAGTATTTCCGTTAGTAGATTTTACATGAAAAAT 26878 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||| || | || | | | | ||| ||||| || |||| |||| ||| | Sbjct 26879 ACCATTATCTAATTCTAATATACTAATGTCAAAAGTTCCTCCTCCCAGATCATAAACAGC 26938 Query 518143 TACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | | | | | | |||| ||||| ||||| |||| || || ||||| | Sbjct 26939 TATAATACCCTGCGCAGACTTG-------TCAAGCCCATAAGCAAGTGCTGCCGCAGTAG 26991 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | |||||||| | ||| | || | | || | ||| ||||| ||||||||||| |||| Sbjct 26992 GCTCATTAATCACTCTAAGCACTTGTAATCCCGTAATCCTTCCCGCATCTTTAGTAGCTT 27051 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTAC 518321 | ||||| || | ||||||||| || || || ||||| | ||| ||| | ||||| Sbjct 27052 GCCTTTGCATGTCATCAAAATATGCGGGCACTGTTATAACAG-ATC--TTAATACTTTAG 27108 Query 518322 CAAT--ATAAGCGCT-TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 | | | || || ||| | | ||||||||| ||||| | || ||||||| Sbjct 27109 AATTTAAAAAATTCTCTGCGGCATTTTTCATTTTTGACAAAATAAATGCACCAATTTGTG 27168 Query 518379 CTGGGGAATATTGCTT 518394 | || ||||||| ||| Sbjct 27169 CAGGAGAATATTTCTT 27184 >seq179 Length=52178 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 366977 ATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGG 367036 |||||| | | || ||| ||||||| |||||||| ||||||||||||||| |||| | Sbjct 39309 ATAATAGATTTAAGATTATAGTAGCTACAATAGCCTTTGGTATGGGTATTGATAAGAAAG 39250 Query 367037 ATGTTAGAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAA 367096 | |||||| | |||||||| || | || || | | | ||||| || || || |||| Sbjct 39249 ACGTTAGATTCGTTATTCACTACAGTATGCCTAAAAGTCTAGAAGGATACTACCAGGAAA 39190 Query 367097 TTGGTAGAGCAGGTCGTGATGG 367118 ||| ||||| ||| | ||||| Sbjct 39189 CTGGAAGAGCTGGTAGAGATGG 39168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780795801914416