Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq478 134 3e-26 seq35 120 7e-22 >seq478 Length=25159 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| || || | ||| ||||| || ||||||||||| ||| || Sbjct 21632 TCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTAAGTGT 21691 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| ||||| ||||| || || || | || ||||| ||||| || || || Sbjct 21692 CCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGTATTCC 21751 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||||||||| || || || ||||||| ||| | || || || | Sbjct 21752 TTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACGTCTAA 21811 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || |||||||| | |||||||| || | |||||||| Sbjct 21812 AGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTT 21855 >seq35 Length=73508 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || | ||| ||||||||||| || || || ||| || Sbjct 17257 TCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTAAGTGT 17198 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||||||||| || ||||||| ||||| ||||| || || || Sbjct 17197 TCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGTATACC 17138 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| ||||| ||| || || || || | ||| ||| || || | Sbjct 17137 TTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACATCTAA 17078 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTA 195149 |||| || |||||||| | || ||||| || | ||||| ||| ||||| Sbjct 17077 AGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCA-TTAGGGTTA 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473980635112