Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq504 179 3e-39 seq1 152 4e-31 seq462 140 3e-27 seq124 129 5e-24 seq478 123 2e-22 seq433 102 7e-16 seq2 96.9 3e-14 seq290 95.1 1e-13 seq35 91.5 1e-12 >seq504 Length=119805 Score = 179 bits (198), Expect = 3e-39 Identities = 482/725 (66%), Gaps = 33/725 (5%) Strand=Plus/Plus Query 684095 CTGTGTTTGATCAATAAATGGTGCACGTTCAGCAGCCATTTCTATGATA-GATT--TTTG 684151 ||| | |||||| ||||| | ||| |||||||| | ||||| | | | || ||| Sbjct 9325 CTGAGATTGATCGATAAAAAGCTGACGATCAGCAGCTAAATCTATCACATGCTTCATTTT 9384 Query 684152 AGGTATTTCCCAAACAGTGCGATAAATATCTTTAATATGCTGGGGAATAG--TTGGTATT 684209 || |||||| |||| ||||| ||||||||||| ||| || |||| || |||| Sbjct 9385 ---TAGTTCCCATGCAGTTTTATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATT 9441 Query 684210 TTAGAAATTGATCCTCGATAATATTTGATAAGATCAATCATATCCGAATTCCAAAGACCT 684269 || ||||||||| ||| | | || || | |||| || | ||| | | | Sbjct 9442 TT--GTATTGATCCTTCATATTCAATAATCAGGTTTTTCATTTCATGAGACCATAAATTT 9499 Query 684270 AAATCAATTAAATCCTGAACTAAATATTTATTAATGACATAATAATCTCCAGCTAAAGTA 684329 |||| ||||||||| | | || |||| ||| | | | | | ||||| || || Sbjct 9500 AAATTAATTAAATCTTTCAACAAGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTT 9559 Query 684330 CTTCTTGAATAAATATTTTCAGTAAAGGGCTCGATGCACTCATTGTAACCCATGATTTGA 684389 ||||| | |||||||||| ||| || ||||| | ||| ||||| | | | |||||| Sbjct 9560 CTTCTAGTATAAATATTTGAAGTGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGA 9619 Query 684390 GAAGTACTTGCTGTGGGCATACAAG-TAGTTGTTAAACTATTTCTAACACCATATTTTTG 684448 |||||||| || || |||||| || || | | | ||||||||| || |||| |||| Sbjct 9620 GAAGTACTAGCAGTAGGCATAGGAGATACTAG-AAGACTATTTCTCACCCCATGCTTTT- 9677 Query 684449 GATATCTATCATCAAACTATCCCAATCCCACATTCCACTTAATTTATCCGAGC--TAAGA 684506 ||||| | || || || ||| | |||| || ||||| || | | Sbjct 9678 -TTATCTTTTCTCTAAGTA----AATTC--CATTTTTCTAAATTT---GGAACTTTTTTT 9727 Query 684507 TTCCATAAATCAAATTGGAATTTTCCTTTGGAAAGAGGACTTCCTATAAATGTTTCATAA 684566 || ||||| ||||| || || ||||||| | ||| ||| |||||||||||| Sbjct 9728 TTGCATAACTCAAAGTGAAAAATTCCTTTACTTAACGGAGAGCCTGCGAATGTTTCATAA 9787 Query 684567 GCACCAAATTCTTTGGATAATTTCATTGATTCTTCCAGACAACCAAAATAAATAGTTTCA 684626 | |||| ||||||| | | || | ||| ||||| ||| | ||||||| |||||| Sbjct 9788 GGACCATATTCTTTTGCAAGTTCAACTGACTCTTCAAGAGCGGAATAATAAATTGTTTCA 9847 Query 684627 AATATTTTACGATTGAGATCGCGAGCCAATTCAGAATCAAATGGTGTTTTAAAAATCGCA 684686 ||||||||| ||| | ||| | ||| || | ||||| || | | | || Sbjct 9848 AATATTTTAAAATTTAAATCTCTAGCATTTTGACTGTCAAAAGGATATCGCATTAGTACA 9907 Query 684687 AAAACATCCGCTACTCCTTGGACACCAACACCAATTGGCCTATGTTTAATATTAGATACA 684746 ||| |||| || | |||||| ||||| | ||||| || | ||| ||| || ||| Sbjct 9908 AAAGCATCTGCCAATCCTTGTACACCTATTCCAATAGGTCGGTGTCTAA----AGTTACT 9963 Query 684747 CGTGT----TTTATCAACTGGATAAAAATTAATATCAATAACATTATTAAGATTTCTTGT 684802 | | | || || || |||||||| || | |||||| |||||| ||||||||||| Sbjct 9964 CCTTTTACATTCTTCTACAGGATAAAATGTACTGTCAATACAATTATTTAGATTTCTTGT 10023 Query 684803 CATAA 684807 |||| Sbjct 10024 TATAA 10028 >seq1 Length=193190 Score = 152 bits (168), Expect = 4e-31 Identities = 276/397 (70%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 344257 TTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTT-TAAC 344315 ||||| | ||||| || || || | ||||||||| || || ||||| | || | | | Sbjct 75196 TTATCATCAACCATATGCTTAAGCCTTTGATAATAAGTAGGGCCAATATAAATCTGTGCC 75255 Query 344316 TTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCAT-GCT--TCAT- 344371 | ||| | || || ||||| ||||| ||||| |||| ||| | | ||| | || Sbjct 75256 CTTAATT-TATGACCTGTCATGCCATTGTACATAACTTCAAATCCTCTTTGCTGGTAATT 75314 Query 344372 GTCCTAAAGCTACTAAATCATCATTAATTTTATTAATATTAACTCCTGTAAATGGAGTTG 344431 || || || ||| | ||| |||| || | || ||||||| |||| ||||||| Sbjct 75315 GTACT----CTTTTAACTTTTCACTAATATTGTCAACTGTAACTCCATTAAACGGAGTTG 75370 Query 344432 CATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGAC 344491 ||||||| | | | ||| ||| |||||| || || | |||||||||||| | || | Sbjct 75371 CATCTCCTTCTTCGCCTGTAAGAGCACAAGTCTTTCCCATTAAACATTCAATAAGATGCC 75430 Query 344492 CTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTG 344551 |||| ||||| | | || ||| || |||||||||||||||||| || | || ||| Sbjct 75431 CTATAGTCATTCTGCTAGGTATAGCATGAGGATTAATAATAATATCTGGCACTATACCTT 75490 Query 344552 ATTTTGTGAATGGAAGATCTGCACGATGAATTTTAAATCCAACTGTTCCTTTTTGTCCAG 344611 || ||||| | |||| | ||| | | | | ||| ||||| |||||||| || Sbjct 75491 CAGAAGTAAATGGCATATCTTCTTGATTTAATGTTATTCCTACTGTACCTTTTTGCGCAT 75550 Query 344612 CTCTTGATGAGAATTTATCACCTACTGCTGGAATTCT 344648 |||||||| ||||||||||| | | ||||||||| Sbjct 75551 GTCTTGATGCAAATTTATCACCCATTTGTGGAATTCT 75587 >seq462 Length=28027 Score = 140 bits (154), Expect = 3e-27 Identities = 192/262 (73%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 368893 GCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTA 368952 ||||||||| | ||| ||||||||||||| | |||||||||||||| || || Sbjct 19445 GCTGATTTTATTGGTGAAGGAATTGATCAAACAAGAGGTTGGTTTTATACTCTTCATGTC 19386 Query 368953 TTATCCACAGCTATT-TTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGT 369011 | || || ||||| || || |||||||||||||||||||| || || | ||| ||||| Sbjct 19385 ATTTCTACT-CTATTATTTGACAAACCGGCTTTTAAAAATGTTATTGTTAATGGCATTGT 19327 Query 369012 TAATGCATCTGATGGTCAAAAGATGTC--AAAAAG-TAAGGGTAATTATTCCGATCCTAA 369068 | ||| | ||| |||| ||||| |||||| ||| |||||| | ||||| || Sbjct 19326 TCTTGCTGAAAACGGTAAAAAAATGTCGAAAAAAGATAAA---AATTATCCAGATCCAAA 19270 Query 369069 TATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTCATCACCTGT 369128 |||| | || | | ||| |||||||||| ||| || | || | | || |||||||| Sbjct 19269 TATTGTCATGAAAACATTCGGTGCTGATAGTTTAAGGATGTATTTGATCTCTTCACCTGT 19210 Query 369129 AGTAAAAGCAG--AATCTATTA 369148 |||| |||||| ||||| ||| Sbjct 19209 AGTAGAAGCAGACAATCTTTTA 19188 >seq124 Length=58341 Score = 129 bits (142), Expect = 5e-24 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||||| |||||| || ||| |||||| |||||||| | ||||||| |||| Sbjct 1006 GAAACAGCAGGAGGTGTTGCAACTGTTCTTATTCCTAGAAATAGTTCTATTCCAGTTAAA 947 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 || | |||| | || ||| ||||||||||||| ||||| |||||| | ||| | Sbjct 946 AAGACCGAAACATTTACAACTTATGCAGATAATCAAACAGCTGTAACAATTAATGTTTAT 887 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||| | ||| || |||| || |||||| |||| | ||||||||||| || Sbjct 886 GAAGGTAACAGAGCTTTAGCTAAGGAAAATAATTTGATTGGATCATTTAATTTAGATGGA 827 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 ||| ||| ||||| | || ||||| | |||||||| || || ||| | ||| ||| Sbjct 826 ATTATTCCAGCTCCCAGAGGGGTACCAAAGATTGAAGTCACCTTTGATGTTGATAATAAT 767 Query 552570 GGAATTTTGAATGTGACTGCTTGTGATAA 552598 || | |||||| | |||||| ||||| Sbjct 766 GGTGTGTTGAATATTACTGCTGAGGATAA 738 Score = 93.3 bits (102), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| |||||||| || |||||| ||||| |||| || ||||||||| Sbjct 2374 GCAATTGGTATTGATTTAGGTACAACATATTCATGTGTAGGTGCTTACATGAATGGTAAA 2315 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||| | ||| | ||| | ||||| ||||| ||| ||| ||||| Sbjct 2314 GTTGAAATTATCACAAATCCAGATGGTGATAGAACAACTCCTTCTATTGTGGCTTTCGGT 2255 Query 550112 GAAACTG--AACATT-TAGTTGGTGATGCAGCAA--AATATCAAGCCACTGGTAATCCTA 550166 || ||| || ||| | || ||| ||| |||| | ||| | ||| || ||||| Sbjct 2254 GAGTCTGGAAATATTATCGTCGGTTCTGCTGCAAAGAGTATGTA--CACAAGTGATCCTG 2197 Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 || |||||||||||||||| | | || |||||| | ||| ||||| Sbjct 2196 CCTCAGTTATTTTTGATGCTAAAAGAATGATAGGAAGAGGATTTGATGAT 2147 >seq478 Length=25159 Score = 123 bits (136), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || ||||| | ||||||||||| |||||||||||| || || || ||||||| Sbjct 21645 ACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTAAGTGTCCTACCATCTTCA 21704 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || ||||| || |||||||| | ||| || ||||| || || ||||||||||| |||||| Sbjct 21705 AGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGTATTCCTTCTTTGTCTTGA 21764 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAGTAACAGTTTT 563444 ||||| |||||| ||||| | ||| | | ||| || | ||||| |||||| Sbjct 21765 ATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTAC-GTCTAAAGTAATAGTTTT 21823 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || |||||||| Sbjct 21824 TCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 >seq433 Length=33022 Score = 102 bits (112), Expect = 7e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || ||||| || || ||||||||| ||||| ||| | ||||||||||||||||| ||| Sbjct 27091 GTTATAACAGTGCCCGCATATTTTGATGACATGCAAAGGCAAGCTACTAAAGATGCGGGA 27032 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 | ||| | ||| | | || ||| | | || ||||| |||||||| || |||||||| Sbjct 27031 AGGATTACGGGATTACAAGTGCTTAGAGTGATTAATGAGCCTACTGCGGCAGCACTTGCT 26972 Query 550523 TATGGACTTGATAA 550536 ||||| ||||| || Sbjct 26971 TATGGGCTTGACAA 26958 >seq2 Length=91783 Score = 96.9 bits (106), Expect = 3e-14 Identities = 325/497 (65%), Gaps = 13/497 (3%) Strand=Plus/Plus Query 686883 GTAGAAGAAGTTGATTTATCTAAAGATGTTCAACATTGGAATAAATTAAGTGAAAATGAT 686942 ||||||||||||||| || || || | ||||| ||||| ||| || || Sbjct 36715 GTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTTATCATTAAATGATAAAGAA 36774 Query 686943 AGAATTTTTATTATGCATGTTCTTGCATTTTTTGCATCTGCAGATGGTATTGTTAACGCT 687002 ||| |||||| || || | ||||||||||| | ||||||||||||||||||| Sbjct 36775 AGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTCAGATGGTATTGTTAACGCC 36834 Query 687003 AATATTAAAGA-AAATTTGATAGATGTGGTTAAAATAAAAGAAGCAGAATGTGCATATGG 687061 ||| | || | ||| | || ||| || | |||| ||||||| | || ||||| Sbjct 36835 AATTTAGTTGAGAGATTCGCTA-ATGAAGTGACAATATTAGAAGCAAAGTGCTTTTATGG 36893 Query 687062 TAAACAATTCGAAATGGAAAATGCTCATGGTGAAATGTATTCTTTAATGTTAGACACTTT 687121 ||| | | || |||||| |||| |||| |||||||| ||| | |||| ||| Sbjct 36894 ATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATTCATTATTAATAGATGCTTA 36953 Query 687122 TGTGAAAGATGATATTCTTaaaaaaaaTTTAATAGAAGCTATTAAAACAATGCCTAGCAT 687181 | | | |||| | | |||| | || | | | || || | || || || | || Sbjct 36954 TATTACAGATCAAGATGAAAAAACACATCTCTTTAATGCGATAAGTACTATTCCATGTAT 37013 Query 687182 TAAGAAAAAAGCAGATTGGTGTCAAAAATGGATTAAATCTGATAAAACGT-ATGCTCATA 687240 || || ||||| || ||| | |||||||||||| ||| ||| | | || | | Sbjct 37014 AAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAAGATGAAAAATCATCATTCGCGAC 37073 Query 687241 AATTAGCA--GCATTTGCGGTTGTTGAAGGTGTTTTCTTTAGCGGATCTTTTGCATCTAT 687298 | || || |||||| || ||||| | || ||| ||| | ||||| || || Sbjct 37074 ACGCGTCATTGCTTTTGCGTGCGTAGAAGGAATATTTTTTTCCGGCGCATTTGCGTCAAT 37133 Query 687299 TTTTTGGCTTAA-AACTCGTAAAGGATCAGTTATGCCTGGTCTTATTAAATCAAATAAAT 687357 || ||||| || ||| | ||| || ||||||||||||||| | || ||| ||| Sbjct 37134 CTTCTGGCTAAAGAAC----AGAGG-TC--TTATGCCTGGTCTTACTTTCTCTAATGAAT 37186 Query 687358 TTATTGCGCGTGATGAA 687374 | ||| | | |||||| Sbjct 37187 TAATTTCTAGGGATGAA 37203 >seq290 Length=41949 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/139 (78%), Gaps = 16/139 (12%) Strand=Plus/Minus Query 864998 AATTAATAAT-ATTTTTCATGAAAAATATTATTAACAACTTTAA--ATTTATTCAACTGT 865054 ||||||| | |||||| || ||||| | ||| || ||||| |||||||||||||| Sbjct 28465 AATTAATTTTGATTTTTAATTAAAAA-AGTATAAA----TTTAACCATTTATTCAACTGT 28411 Query 865055 TACT-ACTTTGGCTAAATTTCTGGGATAATCAGGATTATTTCCTCTATCTAAAGCT---A 865110 |||| |||||| |||||||||| ||| |||| |||||| |||||| |||| || | Sbjct 28410 TACTGACTTTG-CTAAATTTCTAGGAAAATCTGGATTAAATCCTCT---TAAAACTGCCA 28355 Query 865111 AATAATAAGATAACATTTG 865129 ||| ||||||||||| ||| Sbjct 28354 AATGATAAGATAACAATTG 28336 >seq35 Length=73508 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 ||||||||||| ||| || || ||| || |||||| |||||| | ||| || || Sbjct 17232 GTACTTTCTTTTTGAATGTTATAGTCATTAAGTGTTCTTCCATCTTCCAATTGCTTACCT 17173 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||||| |||||||| || ||||| || || || |||||||||||||| ||||| Sbjct 17172 GCAAATATAAGTCTCTGTTGATCTGGTGGTATACCTTCTTTATCTTGTATTTT 17120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029267653902640