Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 315 8e-81 >seq2 Length=91783 Score = 315 bits (348), Expect = 8e-81 Identities = 611/893 (68%), Gaps = 28/893 (3%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 ||||||||||| | ||| | | || || ||||| || || ||| ||| |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 36944 TTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACA-TGATAA-TTCCTTC 37001 |||||||||||| || ||||| |||||| || ||| | || | | ||| || || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTA-ATATTTCTCAAGTCCTAAATTAATTA 37394 Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 | || | |||| || |||||||| || |||| |||||| || | | | || || ||||| Sbjct 37393 ATAATC-TATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 37062 AGTTTTACTGG--AATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAA 37119 || ||||| || || || ||| |||||| ||| |||||| ||| || ||||| | Sbjct 37334 AGATTTACCGGTAAACTGACACTT--AGAAATTCTTTCTCTATTTCTACCGCTTCTTTCA 37277 Query 37120 CTATATTAACAATAACTTCTTCAGTTGGGGGAT--ATT--TTAAATATTTAAACAATAAA 37175 |||||| || ||| || || ||| ||| ||||||||| | | ||| Sbjct 37276 CTATATCAAGAAT----------GTGTGGCGATTTATTAATTAAATATTGATTTAGCAAA 37227 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || || || |||||||| || |||||||| ||| || ||||||||||| || || | Sbjct 37226 CAAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGA 37167 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||||| || || | ||| || |||| ||||| | || ||||| || Sbjct 37166 CCAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAAT 37107 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| || ||||| || | | ||||| |||| | ||| | | ||| | Sbjct 37106 ATTCCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA 37047 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||||||| || ||| || || || ||| | |||| ||| || || || || Sbjct 37046 ATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTA 36987 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 |||||| ||||||| || |||||| ||||||| ||| |||| ||| |||||| Sbjct 36986 AAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATC 36927 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||| ||||||||||| || |||| ||||| |||||||| ||| | ||||| ||| | Sbjct 36926 TCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATATT 36867 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 || || ||| || |||| | |||| || | ||||| || ||||| || ||| Sbjct 36866 GTCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCA 36807 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCATTTGATAATTTTTTCCAA 37652 || || || | || || | ||||| | |||||| |||||| |||| | |||| Sbjct 36806 AAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATT---TAATGATAACCAA 36750 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 ||||| | || | || ||||||||| || || ||||| || || | || | Sbjct 36749 TCATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTT 36690 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATC 37765 ||||||||| ||| || |||| || || || ||||||| ||| | || || Sbjct 36689 TTATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTC 36637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312831477440