Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35 95.1 9e-15 seq478 86.0 5e-12 >seq35 Length=73508 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | |||||||||||| | || || ||||||||||| || || ||| Sbjct 17262 CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTA 17203 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | || ||||| |||||||| |||||||| |||| ||||||||| | || Sbjct 17202 AGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGT 17143 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || || || |||||| | | ||| || || || || Sbjct 17142 ATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACA 17083 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| || | || |||||||| || ||||| Sbjct 17082 TCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 >seq478 Length=25159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || | ||||| || || ||||| || |||||||||||| || | | | | || Sbjct 21642 AAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTAAGTGTCCTACCATCT 21701 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || | ||| ||||| ||||| |||| || ||||||||| | || | || || ||||| Sbjct 21702 TCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGTATTCCTTCTTTGTCT 21761 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| || ||||||| | | || || | ||| || || | ||||| ||| Sbjct 21762 TGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACGTCTAAAGTAATAGTT 21821 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || | ||||||||||| || ||||| Sbjct 21822 TTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935111525128