Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq504 149 3e-31 seq466 129 3e-25 >seq504 Length=119805 Score = 149 bits (164), Expect = 3e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 ||||| || ||||| ||| || |||||| |||||| | |||||||||||||| Sbjct 10376 TTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAACTCTTTCCATAAATAAATCATTT 10435 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| |||| ||| | |||||| ||||| || ||||| ||||| ||| ||| || Sbjct 10436 ATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATCTTCACTTCCGGTATTTTTTCTT 10495 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | |||||| ||||||||||||||| ||||| ||||||||||| || || | ||||| | Sbjct 10496 AAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTCTAAATAAATTGCCATACTACTT 10555 Query 26069 TTTCTTTTTCCTCCACCTTGAT 26090 |||| | |||||||||| Sbjct 10556 GATCTTCTATTGCCACCTTGAT 10577 Score = 86.0 bits (94), Expect = 3e-12 Identities = 301/458 (66%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 24665 GTAAATTGCTTAGCTGA--TACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCA 24722 ||||||| ||||||| || | |||| || || | ||||||||| |||||||| | Sbjct 9191 GTAAATTTAATAGCTGAAGTAAT--TGGTCGTGTCCTTAAATAATACATGCCAGTTTTTA 9248 Query 24723 ATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA-ATGTTTGCTGATTCT 24781 || |||| | | ||||||||||| ||||||| | | | || |||| | | Sbjct 9249 ATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAGTTTAGAATAAGTGGGCTG-TGCC 9307 Query 24782 AAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCA 24841 | || || || | || |||| ||| | |||| | || | ||| |||||||| || Sbjct 9308 ACGAATAAATTTAATGACTGAGATTGATCGATAAAAAGCTGACGATCAGCAGCTAAATCT 9367 Query 24842 ATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGA 24901 || | ||||| || || | || ||||| || ||||| || || ||| Sbjct 9368 ATCACATGCTTCATTTTTAGTTCCCATGCAGTTTTATAAAGATCTTTAATATCCTGTGGT 9427 Query 24902 ATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAA---TCTCATATTC 24958 ||| | ||||||||| | |||||| | | | |||||| ||| | |||| | Sbjct 9428 ATAGATTTAATATTTTGTATTGATCCTTCATAT-TCAATAA--TCAGGTTTTTCATTTCA 9484 Query 24959 GGTGTCCAAAGATT-AATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAA 25017 | | ||| | ||| || || | || |||| | | ||||| || ||| | || ||| Sbjct 9485 TGAGACCATAAATTTAAATTAATTAA-ATCTTTCAACAAGTATTGATTGACAATTTGAAA 9543 Query 25018 TTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| | |||||| ||| ||| |||||||||||||| ||||| |||||| Sbjct 9544 CTCTCCTGCATGTGTTCTTCTAGTATAAATA--TTTGAAGTGAATGGCTCAAAGCATTCA 9601 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCAT 25113 ||||| || |||||||||||| || || ||||| Sbjct 9602 TTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCAT 9639 >seq466 Length=27249 Score = 129 bits (142), Expect = 3e-25 Identities = 324/482 (67%), Gaps = 14/482 (3%) Strand=Plus/Minus Query 24704 TAATACATTCCAGTTTTCAATT-TCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTT 24762 ||||||||||||||||||||| || | ||||| || ||||||||||| || || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGT-TTCCATCCATAAAAATGCATACTTGATAATAT 26795 Query 24763 TGCA-ATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821 | |||| ||| | | | ||| || || | ||||||| ||| ||||| | Sbjct 26794 CGGGTATGTAGGCTT-TGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCT 26736 Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881 | || ||||| || || || || | |||||| || || || ||||||| ||| Sbjct 26735 GCCTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATA 26676 Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATA 24941 |||||| || || |||||||| || ||||| | |||||| | || | |||| | Sbjct 26675 ACTCTTTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGT-TCAACA 26617 Query 24942 GATTCAATCTCATATTC--GGTGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTG 24999 || ||| | |||| || | ||| | |||| ||| | ||| | || | | Sbjct 26616 -ATATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATA 26558 Query 25000 TTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTG---ATAAGTTTGAAGT 25056 |||||| || |||||||||| | | || ||||| | | ||| || ||||| Sbjct 26557 CCTATTTACCATTTGAAATTCTCCACA---AGCTGTTCTTCTAGTGTATATATTAGAAGT 26501 Query 25057 GAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAA 25116 ||||||||||| ||||||||| || ||||| || || |||||| ||||| Sbjct 26500 AAATGGTTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGG 26441 Query 25117 TGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCA 25176 ||| ||||||| |||||||| | ||||||||| | ||| | || | ||| | ||||| Sbjct 26440 TGCAATTAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCA 26381 Query 25177 AT 25178 || Sbjct 26380 AT 26379 Score = 123 bits (136), Expect = 1e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||||| ||||| |||||| | || |||||| | | |||||||||||| | Sbjct 25707 TTTGGACAAAATAATGACCAATCCTCGTTAGCCTCAACCCTTTTCATAAATAAATCATTA 25648 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 |||||||| || ||||| |||||| ||||| | ||| |||||||| | | ||| || Sbjct 25647 ATCCACATGCCAGTAAATACATCTCTGGCTCTTAATTCATCTTTTCCAATACTTTTTCTT 25588 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 | |||||| |||||||| || ||| |||||| || |||||||| |||||| Sbjct 25587 AAATCTAAAAAATCAAAGATGTCTTTGTGCCAGGGCTCTAAATAAATAGCA 25537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038347016200