Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq478 172 1e-37 seq35 167 4e-36 >seq478 Length=25159 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| |||| | || ||||| || ||| ||||| ||||| || || Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTA 21686 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || ||| ||| || | ||||| || |||||||| |||||||||||||| || ||| Sbjct 21687 AGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGT 21746 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||||||||| ||||| ||||| | ||||| |||| ||| | || |||||| || Sbjct 21747 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACG 21806 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| ||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 21807 TCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTT 21856 >seq35 Length=73508 Score = 167 bits (184), Expect = 4e-36 Identities = 210/287 (73%), Gaps = 5/287 (2%) Strand=Plus/Minus Query 193076 TATTTAATTATTACATAATTTTGGTTAATTaaaaaa-aCCCGAGTAAGTAATTTATATAC 193134 ||||||| || || | ||| ||||||||||| | | | || || |||| || Sbjct 17317 TATTTAAATAGTAAAAAAT----GTTAATTAAAATTTATGCAAACAAATAGTTTAATAAC 17262 Query 193135 CACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATA 193194 ||||||| |||| | |||| |||||| ||| ||||| ||| |||||||| | Sbjct 17261 CACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTAA 17202 Query 193195 ACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTA 193254 ||||| ||| || ||||| || || ||||| || | |||||||||||| || |||| Sbjct 17201 GTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGTA 17142 Query 193255 TTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTT 193314 | |||||||||||||||||||| | |||| |||| |||| ||| | ||||| | Sbjct 17141 TACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACAT 17082 Query 193315 CTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| ||| || ||||| ||||| || || |||||||||||||||||| Sbjct 17081 CTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCATT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899648372315520