Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 273 3e-68 seq478 156 6e-33 seq35 132 7e-26 >seq2 Length=91783 Score = 273 bits (302), Expect = 3e-68 Identities = 608/902 (67%), Gaps = 25/902 (3%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAA--TGATA 17918 ||||||| |||| | || |||| || |||||||| || || ||| | || | ||| Sbjct 37514 GCTTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 17919 TTAAATTCATAAAATCAAATGGATT-AGTGGTTTTATAATATTTTTCTTGTATTAATTCG 17977 || | ||||||||| || ||||| |||| | || |||||||| || || ||| | Sbjct 37454 TTT--TCCATAAAATCGAAGGGATTCAGTG-TATTGTAATATTTCTCAAGTCCTAAATTA 37398 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 |||||||||||| ||||||||||| | |||||| |||| | | |||||||| || Sbjct 37397 ATTAATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCA 37338 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | || | | |||| | || | | ||||||||||||||| || || | ||||| Sbjct 37337 ATAAGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTC 37278 Query 18098 ATTATGTTTATTACCCTAGA--TTTTGGCAATTTATTAATTATGTGATTATAATATAATA 18155 | ||| | | ||| | |||| |||||||||||| || | || || | Sbjct 37277 ACTATAT--------CAAGAATGTGTGGCGATTTATTAATTA---AATATTGATTTAGCA 37229 Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215 |||| || || ||| || || |||||||| || || |||||||| ||| || || | Sbjct 37228 AACAAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAA 37169 Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGA 18275 || ||||| | |||||| || |||||||| || || || || || | ||||| | Sbjct 37168 GACCAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAA 37109 Query 18276 ATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 |||| || || |||||||| || || || | | | || || |||| || || Sbjct 37108 ATATTCCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTT-TTCATCT 37050 Query 18336 GT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | |||||||| ||||||| || ||| ||||| || ||| | ||| ||| Sbjct 37049 TTAATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCA 36990 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||||| | || |||||| | |||| | ||||||| || ||||| || |||||| Sbjct 36989 TTAAAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATAC 36930 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 || ||| ||| || |||| || |||| ||||| | |||||| | | || || | Sbjct 36929 ATCTCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC-TAA 36871 Query 18515 TATTG-AATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| | || || ||||| || || ||||| | ||||| ||||| || | | Sbjct 36870 TATTGTCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGC 36811 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGT-TCC 18632 || |||||||| |||| || | ||| || | | |||| ||||| || | || | || Sbjct 36810 GGCAAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTA-ATGATAACC 36752 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | |||| | | || | ||||||||||||||| ||||| || ||||| ||||| | Sbjct 36751 AATCATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTT 36692 Query 18693 GTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAAT 18752 ||| ||||| | | || || | || || ||||||||||| | ||| | || | || Sbjct 36691 TTTTATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCAT 36632 Query 18753 TT 18754 || Sbjct 36631 TT 36630 >seq478 Length=25159 Score = 156 bits (172), Expect = 6e-33 Identities = 175/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||||||| | ||||| | || |||||||||||||| ||||| || ||| Sbjct 21856 AAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGT---AGAG 21800 Query 155880 TCTGATAAT---ATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| || | ||| ||| || ||| |||||| ||||| |||||||| ||||| ||| Sbjct 21799 TCTAATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCA 21740 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| |||||||||| ||| ||||| ||||| |||||| || || | ||| Sbjct 21739 GATCAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGAT 21680 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| ||||| || | ||| |||| |||||||||||||| || Sbjct 21679 TACAATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGG 21627 >seq35 Length=73508 Score = 132 bits (146), Expect = 7e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| | || |||||||| ||||| ||||| || ||| Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| ||| ||| || || ||||||||||||||||||||| ||||| ||||| || Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGA--ACTTTATCAGATTAT 155999 ||| ||| | || | ||| |||||||| | |||||| ||| |||| || || ||| Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAAT--GACTAT 17212 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||||| || | ||||| ||||| ||||||||||| ||| Sbjct 17213 AACATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGGT 17263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867096457600