Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 311 2e-79 seq35 185 2e-41 seq478 167 5e-36 >seq2 Length=91783 Score = 311 bits (344), Expect = 2e-79 Identities = 570/825 (69%), Gaps = 27/825 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTC---TCCTATCAATACATATAA 49648 ||||||||| || ||||| ||||| |||||||| || ||||| ||| || ||| Sbjct 37449 CATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTA--AATTAAT-TAA 37393 Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 ||||||||| ||||||||||||| |||||| |||| | | ||||||||| |||||||| Sbjct 37392 TAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCAT-CCCAATAA 37334 Query 49709 -TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 49767 || | ||||| || | ||||||||| ||||||||||| |||| ||| | || Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 49768 tcataattatattattttttgataatttatatttaata-tgattcgcatatattaaACAT 49826 | || | | | | | | ||| ||| ||| |||| ||||| || ||||| Sbjct 37273 T-ATCA--AGAATGTGTGGCGATTTATTA-ATTAAATATTGATT------TAGCAAACAA 37224 Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 || || ||| ||| || || || |||||||| || ||||||||| ||||| | || Sbjct 37223 GCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCA 37164 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 ||||| | ||||| || || ||||| || ||||| ||||| | ||||| ||||| Sbjct 37163 GGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATT 37104 Query 49947 CCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATC 50006 || || || |||||||| || || | | || | || | |||| |||||| ||| Sbjct 37103 CCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTAATC 37044 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || || | ||||| || ||||| ||||| ||| | || ||| | ||| || ||||| Sbjct 37043 CATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAG 36984 Query 50067 AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA 50126 | | ||||||||| |||||||| |||||||| ||| Sbjct 36983 AGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCA 36924 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG- 50185 ||| | | ||| || |||| ||||||| |||||| |||||||| |||| || Sbjct 36923 CTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCT-AATATTGT 36865 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 ||||| | ||||| ||||||||||| | ||||||||||| || || || || Sbjct 36864 CACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAA 36805 Query 50246 GAATGCTAAAACGTATTT--AATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA-GA 50302 |||||||||| ||||| |||||| | | |||| ||||| ||||| | |||| | Sbjct 36804 AAATGCTAAAA--TATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCA 36747 Query 50303 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 || | ||| | || ||| |||||||||| ||||| ||||||| ||| |||||| Sbjct 36746 TTTCTG-TCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 50363 ATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATA 50407 |||||| || |||| ||| || || ||| ||||||| ||||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATA 36643 >seq35 Length=73508 Score = 185 bits (204), Expect = 2e-41 Identities = 186/241 (77%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 192297 TAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGAT 192356 ||||||||||| |||||||| | | || || ||||| |||||| ||||| || Sbjct 17273 TAGTTTAATAA--CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAAT 17216 Query 192357 ATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTG 192416 ||||| ||| | ||||| | |||| |||||||| ||||| ||||| || | |||||| Sbjct 17215 GTTATAGTCATTAAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTG 17156 Query 192417 TTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATC 192476 |||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||| Sbjct 17155 TTGATCTGGTGGTATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATC 17096 Query 192477 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||| || |||| |||||| ||||| || || | ||| || | |||||| ||||| Sbjct 17095 CCCCGGTTCAACATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 Query 192537 T 192537 | Sbjct 17035 T 17035 >seq478 Length=25159 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | | ||| |||| |||||||||| ||||| ||||| |||||| Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTA 21686 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | |||| || | |||||||||||||| || |||||||||||||| |||||| Sbjct 21687 AGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGT 21746 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| ||||| |||||| ||||||||| || || || || ||||| Sbjct 21747 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACG 21806 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| |||||| ||||| || |||| ||||| | |||||| |||||||| Sbjct 21807 TCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTT 21856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984473239083600