Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 282 8e-71 seq35 159 6e-34 seq478 150 3e-31 >seq2 Length=91783 Score = 282 bits (312), Expect = 8e-71 Identities = 598/888 (67%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAA--TGATATT 38888 |||||| |||| || || |||| || || || || ||||| ||| |||| | ||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 38889 AAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTC---TCCTATCAATACA 38945 | ||||||||| || ||||| ||||| |||||||| || ||||| ||| | Sbjct 37452 T--TCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTA--AATTAA 37397 Query 38946 TATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCC 39005 | |||||||||||| || |||||||||| |||||| |||| | | ||||||||| ||| Sbjct 37396 T-TAATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCAT-CCC 37339 Query 39006 AATAA-TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgttt 39064 ||||| || | ||||| || | ||||||||| ||||||||||| |||| ||| Sbjct 37338 AATAAGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTT 37279 Query 39065 aattatcataattatattattttttgataatttatatttaata-tgattcgcatataGTA 39123 | ||| || | | | | | | ||| ||| ||| |||| ||||| ||| | Sbjct 37278 CACTAT-ATCA--AGAATGTGTGGCGATTTATTA-ATTAAATATTGATT------TAGCA 37229 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 |||| || || || ||| || ||||| |||||||| || ||||||||| ||||| | Sbjct 37228 AACAAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAA 37169 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 || ||||| | ||||| || || ||||| || ||||| ||||| | ||||| | Sbjct 37168 GACCAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAA 37109 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 |||| || || || |||||||| || || | | || | || | |||| |||||| Sbjct 37108 ATATTCCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTT 37049 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||| || | ||||| || ||||| ||||| ||| | || ||| | ||| || | Sbjct 37048 TAATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCAT 36989 Query 39364 TAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 |||| | | ||||||| Sbjct 36988 TAAAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACA 36929 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 | ||| ||| | | ||| || |||| ||||||| |||||| | |||||||| ||| Sbjct 36928 TCTCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCT-AAT 36870 Query 39484 ACTG-AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 | || ||||| | ||||| ||||||||||| | ||||||||||| || || Sbjct 36869 ATTGTCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCG 36810 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 39602 || || |||||||||| || | |||||| | | |||| ||||| ||||| | |||| Sbjct 36809 GCAAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAA 36750 Query 39603 -GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTT 39661 ||| | ||| | || ||| |||||||||| ||||| || |||| ||| ||| Sbjct 36749 TCATTTCTG-TCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTT 36691 Query 39662 TTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATA 39709 ||||||||| || |||| ||| || || ||| |||||||| ||||| Sbjct 36690 TTTATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATA 36643 >seq35 Length=73508 Score = 159 bits (176), Expect = 6e-34 Identities = 183/243 (75%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 171830 TAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAAT 171889 |||||| |||| |||||||| | || || || ||||| |||||| ||||| ||| Sbjct 17273 TAGTTTAATAA--CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAAT 17216 Query 171890 ATTATAATCTGATAAAGA--TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || ||| || | | || |||||||| ||||| ||||| || | |||| Sbjct 17215 GTTATAGTC--ATTAAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTC 17158 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || |||||||| ||||||||||||||||||||| |||||||| ||||| | Sbjct 17157 TGTTGATCTGGTGGTATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAA 17098 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || |||| |||||| ||||| || || | ||| || | ||||| ||| Sbjct 17097 TCCCCCGGTTCAACATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGC 17038 Query 172068 ATT 172070 ||| Sbjct 17037 ATT 17035 >seq478 Length=25159 Score = 150 bits (166), Expect = 3e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || | || ||||| | || ||| |||| |||||||||| ||||| ||||| Sbjct 21618 TTCTTATTTCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTG 21677 Query 171894 TAATCTGATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 ||||| ||| || | | || || | ||||||||||||||||| ||||||||||| Sbjct 21678 TAATCAC-TAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTG 21736 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || ||||||||||||||||| ||||| |||||| ||||||||| || | || Sbjct 21737 ATCTGGTGGTATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATT 21796 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| |||| |||||| ||||| || |||| ||||| | ||||| |||||||| Sbjct 21797 AGACTCTACGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTT 21856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129935588800