Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 111 5e-19 >seq1 Length=193190 Score = 111 bits (122), Expect = 5e-19 Identities = 348/528 (66%), Gaps = 16/528 (3%) Strand=Plus/Plus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 ||||||| | || ||||| || | ||| |||||||| || ||||||||||||| ||| | Sbjct 75059 TTAAAAAAGCTGACGCACCATGCGAAATAATACAATCGCGCTCCATTTCACCAAAACGTA 75118 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCT 233378 ||| ||||| || || || | || | || ||||| |||| | ||||| | Sbjct 75119 AACCTCCATCCCGCGATCTTCCTTCAACGGGCTGTCGAGTCAAAATCTGTAAAGGACCTT 75178 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGAC 233438 ||| | | || ||| ||||| | |||||||||||| || || ||||||| || | Sbjct 75179 TAGCTCTAGCATGAATCTTATCATCAACCATATGCTTAAGCCTTTGATAATAAGTAGGGC 75238 Query 233439 CAATAAATAGTTCTGCGTGTAATTGTTCCCCAGATTCA--CCGCTGTATAAAACTTCATT 233496 ||||| | | | ||| ||||| | || | ||| || |||| | ||||||| Sbjct 75239 CAATATAAATCTGTGCCCTTAATTTATGACCTG--TCATGCCATTGTACATAACTTCAAA 75296 Query 233497 ACCCGATGAATTGTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACC 233556 || | | |||| |||||||| || || || || | || | | Sbjct 75297 TCCTCTTTGCTGGTAATTGTACTCTTTTAACTTTTCACTAA-TAT-TG-TCAACTGTAAC 75353 Query 233557 TTTATTAGCAAACGCAGTACAATCACCAAAACCACCA-TACGTCGCACACGCTTTACCCA 233615 | |||| |||| ||| ||| || | || || | ||||| | || |||| Sbjct 75354 TCCATTA---AACGGAGTTGCATCTCCTTCTTCGCCTGTAAGA-GCACAAGTCTTTCCCA 75409 Query 233616 TTAAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAA 233675 ||||| ||| || | || || ||||||||||| || |||| ||| || ||||| |||| Sbjct 75410 TTAAACATTCAATAAGATGCCCTATAGTCATTCTGCTAGGTATAGCATGAGGATTAATAA 75469 Query 233676 TTAAATCTGGACGTACTCCCTCCGATGTAAAAGGCATATCTTTTTCAGGGATTATCAGTC 233735 | | |||||| || || || || ||||| |||||||||| || | | | | | || Sbjct 75470 TAATATCTGGCACTATACCTTCAGAAGTAAATGGCATATCTTCTTGATTTAATGTTATTC 75529 Query 233736 CAACTGTTCCCTTTTGGCCGCATCTACTACAG--AATTTATCACCCAT 233781 | ||||| || ||||| ||||| | | | |||||||||||||| Sbjct 75530 CTACTGTACCTTTTTG--CGCATGTCTTGATGCAAATTTATCACCCAT 75575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807492292632