Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq478 111 1e-19 seq35 98.7 8e-16 >seq478 Length=25159 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||||||||| ||||| |||| || ||||| ||||| | || ||| || Sbjct 21856 AAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCT 21797 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 | || | | | | |||||| || ||| ||||||||||| | || ||| Sbjct 21796 AATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGAT 21737 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||| | |||| ||| ||||||||||| || |||| || ||| | |||||| Sbjct 21736 CAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTAC 21677 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAA 110508 || || || |||||| ||| || || | || |||||| | |||| ||||| || || Sbjct 21676 AATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAATAAGAA 21618 >seq35 Length=73508 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/247 (69%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 110257 TTATAAGAGATTTAA----AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTA 110312 |||||| | |||||| ||||||||||||||| || || | || || ||||| |||| Sbjct 17017 TTATAA-ACATTTAACCCTAATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTA 17075 Query 110313 CCGTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAG 110372 | | || || || | ||| || | | | ||||| || || || |||| Sbjct 17076 CTTTAGATGTTGAACCGGGGGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAG 17135 Query 110373 AAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCA 110432 |||| | || |||||||| |||||||| | ||| ||||| || |||| |||| | Sbjct 17136 AAGGTATACCACCAGATCAACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAA 17195 Query 110433 GAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGC 110492 ||||| | || || ||||||||||||||| ||| ||||| ||||||| ||| | Sbjct 17196 GAACACTTAATGACTATAACATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAA 17255 Query 110493 GAGGGGG 110499 |||| || Sbjct 17256 GAGGTGG 17262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838903112248