Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq35 102 7e-17 seq478 86.0 5e-12 >seq35 Length=73508 Score = 102 bits (112), Expect = 7e-17 Identities = 171/247 (69%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| || || | ||||| ||||| ||||| | || || | || Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | ||||| || || ||||||||||| | || ||||| Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||||| | ||| ||||| || |||| || | | |||| | ||||| || Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAA 17214 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 ||||||||| || ||| ||||| ||||||||||||| |||| || | || ||| Sbjct 17215 CATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG---TTATTAAAC 17271 Query 107795 TATTTGT 107801 ||||||| Sbjct 17272 TATTTGT 17278 >seq478 Length=25159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||| ||||| ||||| ||||||| ||||| ||||| | || ||| || Sbjct 21856 AAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCT 21797 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | | | | |||||| || ||| || |||||||| | || ||| Sbjct 21796 AATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGAT 21737 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||| | |||| ||| ||||||||||| || || | | ||| | || ||| Sbjct 21736 CAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTAC 21677 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 || || || || || ||| || || | || || ||||| |||| |||||||| || Sbjct 21676 AATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAATAAGAAG 21617 Query 107793 AA 107794 || Sbjct 21616 AA 21615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874194337304