Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq35 185 1e-41 seq478 183 5e-41 >seq35 Length=73508 Score = 185 bits (204), Expect = 1e-41 Identities = 185/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| |||| ||| | |||||||||||||||||| | ||||| |||| | Sbjct 17037 TGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGGGG 17096 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || |||| |||||||||| |||||||||| ||||||||| || ||||| ||||||| Sbjct 17097 ATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCAAC 17156 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||||||||| ||||| || ||| ||||| | | || ||||| | Sbjct 17157 AGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAACA 17216 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA-TATT 146269 | ||||||||| ||| | ||||| || || |||||||||| ||| | |||| |||| Sbjct 17217 TTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGGTTATTAAACTATT 17275 >seq478 Length=25159 Score = 183 bits (202), Expect = 5e-41 Identities = 181/233 (78%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| ||||||| ||||||||||||| |||||| | || ||||| ||| | Sbjct 21852 TGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCTAATG 21793 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||||||| |||||| ||| |||||||| || ||||| ||||||| Sbjct 21792 ACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGATCAAC 21733 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| |||||||| | || ||| ||| || | | ||||| |||| Sbjct 21732 AGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTACAATA 21673 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAA 146264 |||| |||||| ||| | ||| |||| ||| ||||||||||||| |||||| Sbjct 21672 TACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGG-AAATAA 21621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786161132685120