Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq478 122 7e-23 seq35 105 5e-18 >seq478 Length=25159 Score = 122 bits (134), Expect = 7e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 29595 TTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATA 29654 |||||| || || || ||||| || || | | ||| || || ||||| |||||| | Sbjct 21662 TTCTTTCTGTATATTGTAATCACTAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAA 21721 Query 29655 TATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAG 29713 |||||||| || ||||| || || || || ||||||||||| |||||| | ||| ||| Sbjct 21722 AATCAATCTCTGTTGATCTGGTGGTATTCCTTCTTTGTCTTG-AATTTTAGCTTTTACAT 21780 Query 29714 TTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAA 29773 |||| | | |||| | ||||| || | ||| |||||||| || |||| ||||| | Sbjct 21781 TTTCAATGGAGTCATTAGACTCTACGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTA 21840 Query 29774 CAAATATCTGCATTTT 29789 ||||||| |||||||| Sbjct 21841 CAAATATTTGCATTTT 21856 >seq35 Length=73508 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || | || ||||||||| | || |||||||||||||||||| || | Sbjct 17262 CCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTA 17203 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || || ||| |||| | ||| || ||||| || || Sbjct 17202 AGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGT 17143 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||| ||||||| ||| || ||| |||||| || || |||| || Sbjct 17142 ATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACA 17083 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || ||||| || || | || || |||||||| |||||| Sbjct 17082 TCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCATT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216683555576