Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 7e-13 seq46 87.8 2e-12 >seq1 Length=193190 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 193450 AAATAGGGGATAAATTTTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATT 193509 |||| || ||||||||| ||| || || |||||||| || || || | ||| Sbjct 75577 AAATGGGTGATAAATTTGCATCAAGACATGCGCAAAAAGGTACAGTAGGAATAAC--ATT 75520 Query 193510 CA--CAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCC 193567 | |||||||||||||||||||| || |||||| || |||||||||||||||||||| Sbjct 75519 AAATCAAGAAGATATGCCATTTACTTCTGAAGGTATAGTGCCAGATATTATTATTAATCC 75460 Query 193568 AAATTGTATTCCATCCAGAATGACCAT 193594 || ||| || ||||||||| || Sbjct 75459 TCATGCTATACCTAGCAGAATGACTAT 75433 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 193026 AATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTA 193085 ||||||||||| ||||| || | || || ||||| ||||||||||| ||||||||| | Sbjct 76031 AATGCTATTGTGGCTATTGCATCTTACACAGGTTACAATCAAGAAGATAGTATTATTATG 75972 Query 193086 AATAAAGCTTCTATTGAAAGAGGATTATTT 193115 ||| || | ||||||| ||||||| ||| Sbjct 75971 AATCAAAGTGCTATTGATCGAGGATTGTTT 75942 >seq46 Length=72868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 163085 TTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTT 163144 || || ||| ||||||||||| ||||||| ||| ||||||| ||| || || || ||| Sbjct 16101 TTAGCACAAAATTTTGTTGGTTCAAATAACATAAATTTACTTGTACCAGAAGGACAGTTT 16042 Query 163145 GGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATAC 163197 ||| | |||||| |||| || || |||||||| ||| | ||||||| ||| Sbjct 16041 GGTTCAAGATTAAAAGGCGGAAAGGATTCTGCAGCACATCGTTATATTTTTAC 15989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173344310080