Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq46 87.8 2e-12 seq1 84.2 3e-11 >seq46 Length=72868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 165247 TTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTT 165306 || || ||| ||||||||||| ||||||| ||| ||||||| ||| || || || ||| Sbjct 16101 TTAGCACAAAATTTTGTTGGTTCAAATAACATAAATTTACTTGTACCAGAAGGACAGTTT 16042 Query 165307 GGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATAC 165359 ||| | |||||| |||| || || |||||||| ||| | ||||||| ||| Sbjct 16041 GGTTCAAGATTAAAAGGCGGAAAGGATTCTGCAGCACATCGTTATATTTTTAC 15989 >seq1 Length=193190 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 193003 AAATAGGGGATAAATTTTGTTCGGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATT 193062 |||| || ||||||||| || || || |||||||| || || || | ||| Sbjct 75577 AAATGGGTGATAAATTTGCATCAAGACATGCGCAAAAAGGTACAGTAGGAATAAC--ATT 75520 Query 193063 CA--CAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCC 193120 | |||||||||||||||||||| || |||||| || |||||||||||||||||||| Sbjct 75519 AAATCAAGAAGATATGCCATTTACTTCTGAAGGTATAGTGCCAGATATTATTATTAATCC 75460 Query 193121 AAATTGTATTCCGTCCAGAATGACCAT 193147 || ||| || ||||||||| || Sbjct 75459 TCATGCTATACCTAGCAGAATGACTAT 75433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628526988840960