Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-29 seq124 107 1e-17 seq1 107 1e-17 seq433 105 5e-17 seq179 98.7 7e-15 >seq2 Length=91783 Score = 147 bits (162), Expect = 2e-29 Identities = 527/809 (65%), Gaps = 40/809 (5%) Strand=Plus/Minus Query 161002 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 161059 ||| ||||||||||||| ||| | | |||| | || |||| ||| | ||||| ||| Sbjct 37491 TTTATCAAAGAAATTGGTTTTCCCTACTAAACTT--ATATTTTCCATAAAATCGAAGGGA 37434 Query 161060 TTATCAACATTGAATTTTTTGCGATAACCAAGATCTACAAGTAATCTGTCAGCAACATAT 161119 || |||| | | ||| | || | || | | |||||| ||||| ||| || Sbjct 37433 TTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAATAATCTATCAGCTACAAAT 37374 Query 161120 TTAATATATTGAGACATTAGTTCAGAATTCATACCAAGAAG-TTTACACGGAAGAGAATC 161178 | |||||||||| |||| || | | ||||||| |||| ||| ||||| ||| | | | Sbjct 37373 TCAATATATTGACACATAAGCTTACAATTCATCCCAATAAGATTTAC-CGGTAAACTGAC 37315 Query 161179 ATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGATTC 161238 | | | |||||||| || ||||| | |||||| | | || | ||| | | Sbjct 37314 ACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTATAT------CAAGAATGTG 37261 Query 161239 TTTCAAACGATTATTCAACAATGAATACATAATACAAGCAAGTTCTACATGTTTGTTTTC 161298 | | | |||| | || || || | | |||||| | || ||| ||| Sbjct 37260 TGGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCGAAGTCACAATGCAACCCTTC 37201 Query 161299 ATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCATTTCTCTAGT 161358 ||| | || ||| |||| ||| || | | | ||||||||||| | | |||| | Sbjct 37200 ATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCATAAGAC------CTCTGTT 37147 Query 161359 TTTTAACCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTACAATAGAGAA 161418 |||| |||||| || || ||||||| || ||| || | |||||||| | || Sbjct 37146 CTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTCTACGCACGCAAA 37087 Query 161419 TGCTACTAATT-TGT-GAGCAT-ATGTCTTATCAGATTTAATCCATTTATTACACCAATC 161475 || | | ||| | | || ||| || ||| ||||||||||||| ||| || Sbjct 37086 AGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTAATCCATTTAAGTGCCCAGTC 37027 Query 161476 AGCTTTCTTTTTAATACTTGGCATAGTTTTAATAGAATTAATGAGTTTATTTCTCAAAGC 161535 |||||||||||| |||| ||| ||||| | || | ||||| ||| | || | | | Sbjct 37026 AGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGATGTGTTTTTTCATC 36967 Query 161536 ATCATCTTTAACAAATGTAGTCAACATTAGTGAATACATTTCTCCATGAGCATTTTCCAT 161595 | |||| ||| | | | | | | || ||||||||| || | |||| |||||| || Sbjct 36966 TTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTATGAATATTTTCTAT 36907 Query 161596 TGCATATTGGAAACCAT--AAGCACATTCAGCTTCTTTTATTTTCACAACATCAATAAGA 161653 || ||| || |||| |||||| || |||||| |||| |||| ||| | || Sbjct 36906 GGCTACTTGAAATCCATAAAAGCACTTT--GCTTCTAATATTGTCACTTCATTA--GCGA 36851 Query 161654 TTTTCTTTA--ATATTAGCATTAACAATACCATCAGCTGCCGCAAAAAATGCCAATACGT 161711 | ||| | | ||| || |||||||||||||| | || ||||||||||| || | | Sbjct 36850 ATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAATGCTAAAATAT 36791 Query 161712 GCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTCCAATCATTCACATCTTTTG 161771 |||||| | ||| || | ||| | |||||| | ||||||||| ||| | | Sbjct 36790 TTGAAATAAAGTATCTTTCTTTATC-ATTTAATGATAA--CCAATCATT----TCTGTCG 36738 Query 161772 CC----AAATCCACTTCTTCAACTGTCCA 161796 | | ||| |||||||| || ||||| Sbjct 36737 GCAGTTAGATCAACTTCTTCTACCGTCCA 36709 >seq124 Length=58341 Score = 107 bits (118), Expect = 1e-17 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | ||||| | ||| | | |||||| ||| | |||||| ||||||||||| Sbjct 738 TTATCCTCAGCAGTAATATTCAACACACCATTATTATCAACATCAAAGGTGACTTCAATC 797 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 | || |||||||| |||| || || || || |||||||||| ||| | |||| Sbjct 798 TTTGGTACCCCTCTGGGAGCTGGAATAATTCCATCTAAATTAAATGATCCAATCAAATTA 857 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || |||| || || | ||| || ||| | || || || | ||||||||| Sbjct 858 TTTTCCTTAGCTAAAGCTCTGTTACCTTCATAAACATTAATTGTTACAGCTGTTTGATTA 917 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 |||| ||||||||||||| | || |||||| ||||| | | |||||| |||| Sbjct 918 TCTGCATAAGTTGTAAATGTTTCGGTCTTTTTAACTGGAATAGAACTATTTCTAGGAATA 977 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTC 281685 | | || || ||| || |||||||| Sbjct 978 AGAACAGTTGCAACACCTCCTGCTGTTTC 1006 Score = 93.3 bits (102), Expect = 3e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 432279 AGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATG 432338 ||||| | |||||||||||||||| ||||||||||||| |||||||| | || ||| | Sbjct 34377 AGATTAAAAGGTAAAGAAGGTCGTGTTAGAGGAAATTTAATGGGAAAAAGAGTAGATTTT 34318 Query 432339 TCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCT 432398 ||| | | || ||||| | ||| | |||||| || | | ||||||||||| || Sbjct 34317 AGTGCTAGATCTGTAATTACACCAGATGCAAATATTTCTTTAGAAGAAGTTGGTGTGCCA 34258 Query 432399 CTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTAT 432458 | ||||| |||| | |||||| || | | | ||| | |||||||| Sbjct 34257 TTAGAAATTGCAAAAATACACACTTTTCCAGAGACTATTACACCTTACAATATTGAAAGA 34198 Query 432459 TTGACTCAATTAGTGAAAAATGGTAAAAGAGTATATCCAGGTGCCAATTTTGTAAT 432514 || |||| || || ||||| || | |||||| ||||| |||| ||||| Sbjct 34197 TTAACTCGGTTGGTATCCAATGGACCAAATGAATATCCTGGTGCGAATTACGTAAT 34142 Score = 86.0 bits (94), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||||| || || | ||||| |||| | ||||| | ||| | |||||||| |||||| Sbjct 32877 GAATTTTATTTTCATGCAATGGGTGGTAGAGAAGGGTTAATTGACACAGCTATAAAAACT 32818 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAA 435227 || || || |||||||||||||||| |||||| || Sbjct 32817 GCAGAAACAGGTTATATTCAAAGAAGACTTGTTAA 32783 >seq1 Length=193190 Score = 107 bits (118), Expect = 1e-17 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 69015 TAAATGGTGTTGCATCGCCATACACTCCTTTAACTGCACATAGT-TTTCCTAATAAACAT 69073 |||| || |||||||| || | | ||| ||| ||||| ||| ||||| | ||||||| Sbjct 75359 TAAACGGAGTTGCATCTCCTTCTTCGCCTGTAAGAGCACA-AGTCTTTCCCATTAAACAT 75417 Query 69074 TCAATAAGTTGCCCAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAATATCG 69133 |||||||| ||||| |||||||| | | || ||| || |||||| ||||||||||| Sbjct 75418 TCAATAAGATGCCCTATAGTCATTCTGCTAGGTATAGCATGAGGATTAATAATAATATCT 75477 Query 69134 GGAATTA---ATCCAGATTTACTGAATAACATATCTGCTCGATGAGCTTTGTATCCAATG 69190 || | || | |||| | | ||| ||||||| || ||| | | ||| | Sbjct 75478 GGCACTATACCTTCAGA---AGTAAATGGCATATCTTCTTGATTTAATGTTATTCCTACT 75534 Query 69191 GTACCTTTTTGACCTGCTCTTGACGAAAATTTATCACCTACATTGGGAATTCT 69243 ||||||||||| | |||||| | |||||||||||| | | |||||||| Sbjct 75535 GTACCTTTTTGCGCATGTCTTGATGCAAATTTATCACCCATTTGTGGAATTCT 75587 >seq433 Length=33022 Score = 105 bits (116), Expect = 5e-17 Identities = 252/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||| |||||||| ||||| || ||||||||| |||| | |||| || |||| Sbjct 26819 ATTATCCAAATCTTCTCCTCCTAAAAAAGTATTTCCGTTAGTAGATTTTACATGAAAAAT 26878 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||| || | || | | ||| ||| ||||| || |||| |||| ||| | Sbjct 26879 ACCATTATCTAATTCTAATATACTAATGTCAAAAGTTCCTCCTCCCAGATCATAAACAGC 26938 Query 282310 TACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | | | | | | |||| ||||| ||||| |||| || || ||||| | Sbjct 26939 TATAATACCCTGCGCAGACTTG-------TCAAGCCCATAAGCAAGTGCTGCCGCAGTAG 26991 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | |||||||| | ||| | || | | || | ||| ||||| ||||||||||| |||| Sbjct 26992 GCTCATTAATCACTCTAAGCACTTGTAATCCCGTAATCCTTCCCGCATCTTTAGTAGCTT 27051 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| || | ||||||||| || || || ||||| | ||| ||| | |||| Sbjct 27052 GCCTTTGCATGTCATCAAAATATGCGGGCACTGTTATAACAG-ATC--TTAATACTTTAG 27108 Query 282489 CAAT--ATAAGCGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 | | | || || ||| | | ||||||||| ||||| | || ||||||| Sbjct 27109 AATTTAAAAAATTCTCTGCGGCATTTTTCATTTTTGACAAAATAAATGCACCAATTTGTG 27168 Query 282546 CTGGAGAATATTGCTT 282561 | |||||||||| ||| Sbjct 27169 CAGGAGAATATTTCTT 27184 >seq179 Length=52178 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 131160 ATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGG 131219 |||||| | | || ||| ||||||| |||||||| ||||||||||||||| |||| | Sbjct 39309 ATAATAGATTTAAGATTATAGTAGCTACAATAGCCTTTGGTATGGGTATTGATAAGAAAG 39250 Query 131220 ATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAA 131279 | |||||| | |||||||| ||| | || || | | | ||||| || || || |||| Sbjct 39249 ACGTTAGATTCGTTATTCACTACAGTATGCCTAAAAGTCTAGAAGGATACTACCAGGAAA 39190 Query 131280 TTGGTAGAGCAGGTCGTGATGG 131301 ||| ||||| ||| | ||||| Sbjct 39189 CTGGAAGAGCTGGTAGAGATGG 39168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740604084665136