Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq478 205 2e-47 seq35 167 5e-36 >seq478 Length=25159 Score = 205 bits (226), Expect = 2e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || | |||| ||||||||||||||| |||||| Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTA 21686 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | ||||| ||||| || ||||| |||||||| || | ||| ||||||||||| ||| Sbjct 21687 AGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGT 21746 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||||||| || ||||||||||||||||| | ||||||| ||||| Sbjct 21747 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGACTCTACG 21806 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || ||||| | ||| ||||||||||| |||||| Sbjct 21807 TCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATT 21854 >seq35 Length=73508 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | || || || |||| |||| |||||| || || ||||| ||| Sbjct 17263 ACCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATT 17204 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||| | ||| || || ||||| || ||||| ||||||||||| || Sbjct 17203 AAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGG 17144 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||| ||||| |||||||| || || || ||||||||||| || | ||| ||||| || Sbjct 17143 TATACCTTCTTTATCTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAAC 17084 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTA 82812 || ||||| || || || ||||| | |||||||||||||| ||||||| Sbjct 17083 ATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCATTA 17034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820457301704