Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 174 4e-38 seq124 122 2e-22 seq448 87.8 4e-12 >seq2 Length=91783 Score = 174 bits (192), Expect = 4e-38 Identities = 390/578 (67%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| |||||| |||| || | | | |||||||| ||| | | | | |||| Sbjct 36650 TATTTCCTATTAAATATCATGACATATGGCAGATGTATAAAAAAGCCGAGTCATCATTCT 36709 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| || ||||| | ||| | || || | |||||||| | ||||| | Sbjct 36710 GGACGGTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTTATCATTAAATGATA 36769 Query 131553 ATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTA 131612 | |||| | | ||| |||| || || | ||||| || |||| ||||| ||||||| Sbjct 36770 AAGAAAGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTCAGATGGTATTGTTA 36829 Query 131613 TTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCT-GAAGTAACATCGTTC 131671 | ||| | ||| | ||| | | ||| | || | | | |||| || | || Sbjct 36830 ACGCCAATTTAGTTGAGAGATTCGCTAATGAAGT-GACAATATTAGAAGCAAAGTGCTTT 36888 Query 131672 TACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAG 131731 || |||||||| || | ||| ||||||||| ||||||||||||||||| || || Sbjct 36889 TATGGATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATTCATTATTAATAGAT 36948 Query 131732 AGTCTTGTTAAAAATGAAGATGATAAAAATAAAT-TATTTGATGCTGTAAATAAATTTCC 131790 | | ||| | || ||||||| ||||| | || | ||| |||| ||| || |||| Sbjct 36949 GCTTATATTACAGATCAAGATGA-AAAAACACATCTCTTTAATGCGATAAGTACTATTCC 37007 Query 131791 TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTT 131850 || ||||||||||| || ||||| ||||||||||| ||||||| | || Sbjct 37008 ATGTATAAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAAGATGAAAAATCATCATT 37067 Query 131851 TTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC-TTTCT 131909 | ||| | | | |||||||| || || ||||| ||||| ||||| || || ||| Sbjct 37068 CGCGACACGCGTCATTGCTTTTGCGTGCGTAGAAGGAATATTTTTTTCCGGCGCATTTGC 37127 Query 131910 GTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAAT 131969 || | ||||| ||||| ||||| | || | |||||||| || | || || ||| ||| Sbjct 37128 GT-CAATCTTCTGGCTAAAGAACAGAGGTCTTATGCCTGGTCTTACTTTCTCTAATGAAT 37186 Query 131970 TCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 | || || || ||||||| |||||| ||| || ||| Sbjct 37187 TAATTTCTAGGGATGAAGGGTTGCATTGTGACTTCGCT 37224 >seq124 Length=58341 Score = 122 bits (134), Expect = 2e-22 Identities = 253/369 (69%), Gaps = 16/369 (4%) Strand=Plus/Minus Query 304775 GAAGATGATTTGACATTAAAATACTCTGATATCATTAAATATAACA---ATTTAATTAAG 304831 ||||||||||||||| |||| ||||||| ||||| ||||| |||||| || Sbjct 34584 GAAGATGATTTGACACATAAATTGGCTGATATAGTTAAAGCTAACACGTATTTAAAAAAA 34525 Query 304832 AAAAAGTTA--ACGAGCGATTCTAATTCACATTTGGTTATTGATTATTCAAACAATT--T 304887 | | ||| | |||| | | ||| | || | | |||||| |||| || | Sbjct 34524 TATGAATTAGAAGGAGCA---CCAGGTCA--TGTGATAAGAGATTATG--AACAGTTATT 34472 Query 304888 ACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCA 304947 ||||| ||||||||| || | || |||||||| | |||| || || | || Sbjct 34471 ACAATTTCATATTGCTACTATGATTGATAATGATTTAAGTGGACAACCACAAGCTTTACA 34412 Query 304948 AAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGGTCGTA 305006 || | ||| ||||| |||| ||||| || | | | ||||||||||| |||||| Sbjct 34411 AAAAAGTGGAAGACCAATAAAATCCATTAGTGCTA-GATTAAAAGGTAAAGAAGGTCGTG 34353 Query 305007 TTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTG 305066 || |||| ||| ||||||||||| | || ||||||||||| ||| |||||| ||||| | Sbjct 34352 TTAGAGGAAATTTAATGGGAAAAAGAGTAGATTTTAGTGCTAGATCTGTAATTACACCAG 34293 Query 305067 ATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACAT 305126 || | | ||| | | | ||| | || || ||| | |||||||| || || || | Sbjct 34292 ATGCAAATATTTCTTTAGAAGAAGTTGGTGTGCCATTAGAAATTGCAAAAATACACACTT 34233 Query 305127 TTCCAGAGA 305135 ||||||||| Sbjct 34232 TTCCAGAGA 34224 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 14/162 (9%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||||| ||||| ||| | ||||||||||| ||||||| ||| || | Sbjct 34041 GTACTTTTTAATAGACAACCTTCATTACATAAAATGTCAATGATGGGACATTTCGTTCGA 33982 Query 305390 GTATTATCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAA 305442 || | |||| | || ||| |||||||| ||||| |||||| || ||||| Sbjct 33981 GT----TATGGAAGGTAAAACTTTTAGATTAAATTTAAGT---TGTACGTCACCGTATAA 33929 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||||||| |||||||| ||||||||| | ||| | || || Sbjct 33928 TGCGGATTTCGATGGAGACGAAATGAATCTTCATATGCCACA 33887 >seq448 Length=31228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAAT-GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAAT 305364 |||||||| ||| ||| ||| ||| || | ||||| || || | || ||||| Sbjct 2517 AGACATTTAAAT-ACAGGAGATACAGTTTTGGTTAATAGACAGCCTACCCTTCATAAGCA 2575 Query 305365 GTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA---CATTTCGATTAAATGT 305421 | ||| |||| ||||||||| ||||| ||| ||| || | || || | || | Sbjct 2576 GAGTATAATGGGTCATAAAGTTAAAGTTTTAGAAGGAGAGAAGACGTTAAGAATGCAT-T 2634 Query 305422 AAGTGC-TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 | || ||||| |||||||||||||||||||||||| |||||||||||| | ||| ||| Sbjct 2635 ACGTTAATTGTAAGCCTTATAATGCGGATTTTGATGGGGATGAAATGAATGTACATTTAC 2694 Query 305481 CTCAA 305485 | ||| Sbjct 2695 CACAA 2699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804649563096