Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq478 125 5e-24 seq35 95.1 8e-15 >seq478 Length=25159 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| || | ||||| ||| || ||||| ||||| |||||||| Sbjct 21627 CCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAATCACTA 21686 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | ||||| || ||||||||||| | ||| |||||| | || Sbjct 21687 AGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCTGGTGGT 21746 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || |||| || | || ||| | || || || Sbjct 21747 ATTCCTTCTTTGTCTTGAATTTT-AGCTTTTACATTTTCAATGGAGTCATTAGACTCTAC 21805 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | || || ||||| ||||||| |||||||||||| || ||||| Sbjct 21806 GTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 >seq35 Length=73508 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | ||||||||||| | ||| || |||||||| ||||| || || Sbjct 17263 ACCACCTCTTAATCTCAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATT 17204 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || |||||||| || || ||||| || | | ||| |||||| | || Sbjct 17203 AAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGG 17144 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | | |||| || | | || | | ||| | Sbjct 17143 TATACCTTCTTTATCTTGTATTTT-AGCCTTTACATTTTCTATAGAATCCCCCGGTTCAA 17085 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| ||||| | || |||||||| || ||||| Sbjct 17084 CATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTACAAATATTTGCAT 17036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701852741120