Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq478 129 5e-25 seq35 104 2e-17 seq504 82.4 7e-11 >seq478 Length=25159 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | ||||||||||| |||| |||||| | || || | || || || | Sbjct 21857 CAAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTC 21798 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || | || || | |||||| |||||| || ||||| || ||||| || || Sbjct 21797 TAATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGA 21738 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || ||| | |||| | || ||||| || ||||||| ||| | | || ||||| Sbjct 21737 TCAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTA 21678 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 |||||| || |||||| || | ||| |||| |||||||| ||||||||||| Sbjct 21677 CAATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAA 21624 >seq35 Length=73508 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || |||||| | || || | || || ||| | Sbjct 17036 ATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGGG 17095 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| || | ||||| ||||| |||||||| |||||||| || ||||| Sbjct 17096 GATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCAA 17155 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| || | | || || ||| | ||||||| |||| | | || || || Sbjct 17156 CAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAAC 17215 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| || | ||||| ||||| ||||| ||||| || Sbjct 17216 ATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG 17262 >seq504 Length=119805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 137253 TTTCGCCAGTTCAAT--ACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTT 137310 ||| || ||||||| ||||| | || ||| ||| ||||| ||||| | ||||| Sbjct 9799 TTTTGCAAGTTCAACTGACTCTTCA--AGAGCGGAATAATAAATTGTTTCAAATATTTTA 9856 Query 137311 CTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC-CAATATAGCGAAAGCATC 137369 ||| || |||||||| | ||| ||||| | || ||||| || || | |||||||| Sbjct 9857 AAATTTAAATCTCTAGCATTTTGACTGTCAAAAGG-ATATCGCATTAGTACAAAAGCATC 9915 Query 137370 TGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATT 137414 ||| | |||||| | ||| || || ||||||| |||| |||| || Sbjct 9916 TGCCAATCCTTGTACACCTATTCCAATAGGTCGGTGTCTAAAGTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091417867520