Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 248 7e-61 seq515 165 6e-36 >seq2 Length=91783 Score = 248 bits (274), Expect = 7e-61 Identities = 586/870 (67%), Gaps = 30/870 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 |||| ||| | ||||| ||| ||||||||||||||||||| ||||| |||||||| || Sbjct 36640 AGGTATGTTTTATTTCCTATTAAATATCATGACATATGGCAGATGTATAAAAAAGCCGAG 36699 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 | ||||| ||||| | ||||||||||||| | ||| ||| | ||||| | || Sbjct 36700 TCATCATTCTGGACGGTAGAAGAAGTTGATCTAACTGCCGACAGAAATGATTGGTTATCA 36759 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 ||||| |||||| | | ||||| || |||| || |||||||| ||| || Sbjct 36760 TTAAATGATAAAGAAAGATACTTTATTTCAAATATTTTAGCATTTTTTGCCGCGTCAGAT 36819 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || || || | ||||| ||| | || || | ||||| | || ||||||| Sbjct 36820 GGTATTGTTAACGCCAATTTAGTTGAGAGATTCGCTAATGAAGTGACAATATTAGAAGCA 36879 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA--CAGTC 43994 || |||||||| |||||| | |||||||||||||||||| || ||||| || | Sbjct 36880 AAGTGCTTTTATGGATTTCAAGTAGCCATAGAAAATATTCATAGTGAGATGTATTCATTA 36939 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAA---GCATCGATTGTTTAATGCGA 44051 | | |||||| | || || | |||| | || || |||| | |||||||||| Sbjct 36940 T--TAATAGATGCTTATATTACAGATCAAGATGAAAAAACACATC---TCTTTAATGCGA 36994 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAATTC 44109 || || | || || ||| | ||||| |||||||| ||||||||||| || | Sbjct 36995 TAAGTACTATTCCATGTATAAAAAAGAAAGCTGACTGGGCACTTAAATGGATTAAAGATG 37054 Query 44110 AAATGATTCTT--TTGGAGA-ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 ||| | || | || | || ||| | | || ||||| || ||||| || || || Sbjct 37055 AAA--AATCATCATTCGCGACACGCGTCATTGCTTTTGCGTGCGTAGAAGGAATATTTTT 37112 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 ||| || | |||||| | || || ||| ||||||| ||||| | |||||||| | || Sbjct 37113 TTCCGGCGCATTTGCGTCAATCTTCTGGCTAAAGAACAGAGGTCTTATGCCTGGTCTTAC 37172 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || ||||| ||||| | | |||||||| || ||||| || || ||||| ||| | Sbjct 37173 TTTCTCTAATGAATTAATTTCTAGGGATGAAGGGTTGCATTGTGACTTCGCTTGTTTGCT 37232 Query 44287 ACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGA 44346 | | |||| | | |||| | | | || ||| ||||| || ||| Sbjct 37233 AAATCAATATTT---AATTAATAAATC-----GCCACAC-ATTCTTGATATAGTGAAAGA 37283 Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGA-CAACAGCATTACCTGTAAATTTAATAGGAA 44405 || ||| | ||||| |||||||| | | ||| ||||| |||||| | || || | Sbjct 37284 AGCGGTAGAAATAGAGAAAGAATTTCTAAGTGTCAG-TTTACCGGTAAATCTTATTGGGA 37342 Query 44406 TGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 |||| || | || ||| ||||||||||||| | || ||| | ||| | | | Sbjct 37343 TGAATTGTAAGCTT-ATGTGTCAATATATTGAATTTGTAGCTGATAGATTATTAATTAAT 37401 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 | || || ||| | || | | || || || || ||||||||||||||||| Sbjct 37402 TTAGGACTTGAGAAATATTACAATACACTGAATCCCTTCGATTTTATGGAAAATATAAGT 37461 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || | ||| ||||| || || ||||| ||| Sbjct 37462 TTAGTAGGGAAAACCAATTTCTTTGATAAA 37491 >seq515 Length=119125 Score = 165 bits (182), Expect = 6e-36 Identities = 368/544 (68%), Gaps = 9/544 (2%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || |||| || ||||| | || ||| | |||||||||| || || Sbjct 14246 AATTGGCGGTTTGAAGGCTGAATTTTCCCAGATGTTTAGACGAGCATTTGTCCAACGGGT 14305 Query 19302 TTTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACATGTTCGTGGACTTTTGCTTT 19360 |||| | |||||| || ||| | |||| || | ||||| ||| || |||||| Sbjct 14306 TTTTGATAAAGATGTTATAAAAAAGCTTGGTATTTCT-CATGTCAAAGGAATTATGCTTT 14364 Query 19361 ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAA 19420 |||| ||||| || |||||||| || ||||| | | | |||| ||||| || | Sbjct 14365 ATGGTCCACCTGGAACCGGAAAAACTTTGATTGCAAAAAGA-TTAGGAAATTTATTGAAT 14423 Query 19421 AACAA-CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 || || || |||||||| |||||||||||||| ||||||||||| | || || Sbjct 14424 GCCAGGCCACCTAAAATTGTGAATGGTCCTGAAATTTTAAATAAATACATTGGACAGAGT 14483 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539 ||||||||| || || ||| ||| || || ||||||||| ||| | | Sbjct 14484 GAAGAAAATATAAGAAATTTATTTAAAGATGCAGAAGAAGAATGGAAAATTAAAAAAGAG 14543 Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 | ||| ||||| || ||||| | |||||| | || || || ||||| |||| ||| Sbjct 14544 GATAGTGGATTGCATATCATAATTTTTGATGAAATAGATGCTATTTGTAAAAAAAGGGGT 14603 Query 19600 TCTGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 | | |||| || ||| || ||||| |||||| | || ||| | || Sbjct 14604 AGTTCTACAAATTCGGGGGTAGGAGATCAAGTTGTTAATCAATTACTTAGTAAAATGGAT 14663 Query 19657 GGTGTT-AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAAT 19715 |||||| || | ||| ||| || |||| ||||| |||||||||||||| || ||||| Sbjct 14664 GGTGTTGAATCTTTAGAA-AATGTTCTAGTAATTGGAATGACTAATAGACTAGACTTAAT 14722 Query 19716 AGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGA 19775 || || ||||||||||| ||| | || |||||| | | ||||| ||||| || Sbjct 14723 TGATGATGCTTTATTACGACCTGGTAGATTTGAAATACATTTAGAAATATCTTTACCGGA 14782 Query 19776 TGAA 19779 ||| Sbjct 14783 CGAA 14786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453403618680