Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq504 93.3 4e-14 seq478 87.8 2e-12 seq35 84.2 2e-11 >seq504 Length=119805 Score = 93.3 bits (102), Expect = 4e-14 Identities = 305/461 (66%), Gaps = 21/461 (5%) Strand=Plus/Plus Query 131333 GCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAA 131392 ||||| |||||||| || |||| | | |||| |||| | || ||||| ||||| ||| Sbjct 10100 GCCAGGTTACAAACAGCAATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAA 10159 Query 131393 TTAC-TGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCT 131450 || || | ||||| ||||||||||||||||||| | || | | | |||| || | Sbjct 10160 TTTGATGAT-TTTATTATGCCCAAATTTTGTTGATTAC-TTAATCTATTGCATGTATCTT 10217 Query 131451 TGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTT 131510 | || | |||||| || || || ||||| | ||| | |||||| || | | || Sbjct 10218 TATAAAGCATGTATGGTGTACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATT 10277 Query 131511 TTCGAGC--AGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGT 131568 ||| ||| |||| | | | | | ||| || ||| || ||| ||| || | Sbjct 10278 TTCTAGCTTTAACAACCGTTCTATTTTTTGTTCG-----TTCATATTTTGTGTATAATTT 10332 Query 131569 TTCAAAGTTTTGG--CCAAACGAACTGTCCAAA--TTGGGACATTCGCTGGGACACATTA 131624 | ||| | | | |||||| | || | | || | | ||| | || || | || Sbjct 10333 ATTAAAATCCTCGCCCCAAAC--ATCATCGAGACCTTTAGCC--TCGTTTGGGCAAAATA 10388 Query 131625 GCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC-G 131683 ||||| | | || | ||||||| | |||||| ||||| | ||| || || | Sbjct 10389 ATGACCATTCTTCATTTTTGTCAACTCTTTCCATAAATAAATCATTTATCCACAATGCAG 10448 Query 131684 TACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAG 131743 || || | |||||||||| | | ||||| | || || ||||| | |||| |||||| Sbjct 10449 TA-AAAATATCTCTAGCTCTAATATCTTCACTTCCGGTATTTTTTCTTAAATCTAAAAAA 10507 Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCAT 131784 || ||||| || |||||| ||||| ||||| | |||||| Sbjct 10508 TCAAAAATATCTTTATGCCAAGGTTCTAAATAAATTGCCAT 10548 >seq478 Length=25159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27015 TTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAG 27074 ||||| ||||| | || | || || | |||||| ||| ||||| || |||||||| Sbjct 21621 TTATTTCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTGTAA 21680 Query 27075 TCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCC 27134 || || | | | | ||||| ||||||||||| || |||| | | ||||||||| Sbjct 21681 TCACTAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCT 21740 Query 27135 GGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT 27194 || || | || ||||| || || || ||| | |||| | | ||| | | Sbjct 21741 GGTGGTATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATTAGAC 21800 Query 27195 TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || |||| ||| |||| ||| || || || ||||| ||||| |||||||| Sbjct 21801 TCTACGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCAT 21853 >seq35 Length=73508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGT 27093 ||| |||||||| || ||| ||||||||||| || ||||| | | |||| | | | Sbjct 17248 CAACACCAAATGCAAAGTACTTTCTTTTTGAATGTTATAGTCATTAAGTGTT-CTTCCAT 17190 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| | || ||||| || | || || | ||||||||| || || | ||| ||||||| Sbjct 17189 CTTCCAATTGCTTACCTGCAAATATAAGTCTCTGTTGATCTGGTGGTATACCTTCTTTAT 17130 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | || || || | |||||| || || | |||||| |||| ||| || | Sbjct 17129 CTTGTATTTTAGCCTTTACATTTTCTATAGAATCCCCCGGTTCAACATCTAAAGTAATTG 17070 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTAAACCTTA 27273 ||| || || || || || ||||| |||||||| | |||| ||||| || ||| Sbjct 17069 TTTTTCCTGTGAGTGTCTTTACAAATATTTGCATTAGGGTTAAATGTTTAT--AATTTTA 17012 Query 27274 TTATATTTTGATAATTC 27290 ||| | | ||||| || Sbjct 17011 ATATTTATAGATAAATC 16995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931624116032