Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq46 98.7 5e-16 >seq46 Length=72868 Score = 98.7 bits (108), Expect = 5e-16 Identities = 209/309 (68%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 ||||| |||||||| | || ||||| | || | ||| |||||||| || |||| | Sbjct 15836 CCTGTTCCAATACCTTCTGCCCCATTAACCAATACCATAGGAATAATAGGAACATACCAC 15895 Query 64952 ATAGGCTCAA-CAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTT 65010 || || | | || || || ||||| ||||| |||||||| |||||| ||| Sbjct 15896 TCTGGTTCGATCGATT-GATTCTCTTCATCTAAATATTTCAAAATTAAATCATCTGATTT 15954 Query 65011 TGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTG 65070 ||||||| | | ||| || ||| | | |||| ||||||| | | | ||| Sbjct 15955 ATGAAATATTAATCTAGTAATAGGATTAAGATAAGTAAAAATATAACGATGTGCTGCAGA 16014 Query 65071 GTCTTGTCCAG---TTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATT 65127 || | ||| || || || |||||||| || | ||| | | |||||| || || Sbjct 16015 ATCCTTTCCGCCTTTTAATCTTGAACCAAACTGTCCTTCTGGTACAAGTAAATTTATGTT 16074 Query 65128 GTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACC 65187 |||||||||| |||||| || || | |||| ||| | || ||||||| |||| || Sbjct 16075 ATTTGAACCAACAAAATTTTGTGCTAAACCGACAATGGTTGTATTTAAAGAAACTTCGCC 16134 Query 65188 GTGATGATA 65196 ||||||||| Sbjct 16135 GTGATGATA 16143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678460420400