Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq478 132 5e-26 seq35 113 5e-20 >seq478 Length=25159 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || ||||| || || || ||||||||| | || || ||||| Sbjct 21854 AATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCTAA 21795 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| ||||| |||| | || ||||||||||| ||||| || ||||| || ||||| || Sbjct 21794 TGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGATCA 21735 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | |||||||||||||| || || || |||| | | || || || || || Sbjct 21734 ACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTACAA 21675 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | | || || ||| ||| | |||||||| || Sbjct 21674 TATACAGAAAGAAAGTACTTTACATCTAGTTTT 21642 >seq35 Length=73508 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 |||||||||| ||||| ||||| || || || || || |||||| | || ||||| | | Sbjct 17034 TAATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGG 17093 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 | ||| || | |||| | ||||||||||| || || || || || || || ||||| | Sbjct 17094 GGGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATC 17153 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | ||| | || || ||||| ||||||||| | || |||| | || || ||||||| Sbjct 17154 AACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATA 17213 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | ||||| ||| ||| | ||| | || ||| Sbjct 17214 ACATTCAAAAAGAAAGTACTTTGCATTTGGTGTTG 17248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306578920320